Pinned Repositories
BrCa_cell_atlas
Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".
CAW
Cancer Analysis Workflow
cfCloud
cfCloud: A Cloud-based Workflow for Cell-Free DNA Data Analysis
ChIP-seq-2
My Scripts for the analysis of ChIP-seq data
chip-seq-pipeline
ENCODE Uniform processing pipeline for ChIP-seq
CPNA
CPNA: Cancer progression analysis using network biology
IKAP
IKAP - Identifying K mAjor cell Population groups in single-cell RNA-seq analysis
rFGM
rFGeM: Co-regulation Network Inference using an efficient FGM Profiling
SEpipe
An Automated Cloud-based Super Enhancer Analysis Pipe
TF_chipseq_pipeline
AQUAS TF ChIP-seq pipeline
GenomicsNX's Repositories
GenomicsNX/100-DaysOf-Code-dataScience
GenomicsNX/2024_ISB_workshop_Practical_Methods_in_Spatial-Omics
GenomicsNX/academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
GenomicsNX/awesome-deep-learning-single-cell-papers
GenomicsNX/CanDI
CanDI - A global cancer data integrator
GenomicsNX/cptac
Python packaging for CPTAC data
GenomicsNX/Data-Science-Projects
Explore my diverse collection of projects showcasing machine learning, data analysis, and more. Organized by project, each directory contains code, datasets, documentation, and resources. Dive in, to discover insights and techniques in data science. Reach out for collaborations and feedback.
GenomicsNX/DataScience_Interactive_Python
Python interactive dashboards for learning data science
GenomicsNX/DeOldify
A Deep Learning based project for colorizing and restoring old images (and video!)
GenomicsNX/Doing-Meta-Analysis-in-R
[Read-Only] All R code and source files for the online guide "Doing Meta-Analysis with R: A Hands-On Guide"
GenomicsNX/DragGAN
Official Code for DragGAN (SIGGRAPH 2023)
GenomicsNX/enrichment-analysis-training
Course material for Enrichment analysis course by SIB
GenomicsNX/GenePT
GenomicsNX/generative-ai-for-beginners
18 Lessons, Get Started Building with Generative AI 🔗 https://microsoft.github.io/generative-ai-for-beginners/
GenomicsNX/genomic-data-visualization-2024
Course website for Genomic Data Visualization 2024
GenomicsNX/ggplot2-graphic-design
"Graphic Design with ggplot2", a 2-day rstudio::conf(2022) Workshop by Cédric Scherer
GenomicsNX/GSE_95077
Analysis for "Amiloride, an old diuretic drug, is a potential therapeutic agent for multiple myeloma"
GenomicsNX/home
Source code for online analysis at openCPU
GenomicsNX/jhustatcomputing2023
Course website for Johns Hopkins BSPH Statistical Computing (Biostatistics 140.776) in Fall 2023
GenomicsNX/NGS-introduction-training
SIB course that introduces analysis of NGS data
GenomicsNX/pubmed-pairs
✌️ Search PubMed for each pair of terms from two lists.
GenomicsNX/pymeta
Utility to download and extract document metadata from an organization. This technique can be used to identify: domains, usernames, software/version numbers and naming conventions.
GenomicsNX/Ret-opt
An AI based Retail Industry Optimisation Platform
GenomicsNX/scRNAseq_of_PDAC_PBMC
GenomicsNX/single-cell-training
SIB course on single cell transcriptomics by mostly using the Seurat pipeline
GenomicsNX/speed2
SPEED2:Inferring upstream pathway activity from differential gene expression
GenomicsNX/StableSR
Exploiting Diffusion Prior for Real-World Image Super-Resolution
GenomicsNX/tall
Text Analysis for aLL
GenomicsNX/TCGAplot
A number of functions were generated to perform pan-cancer DEG analysis, correlation analysis between gene expression and TMB, MSI, TIME, and promoter methylation. Methods for visualization were provided in order to easily perform integrative pan-cancer multi-omics analysis.
GenomicsNX/topr
topr is a collection of plotting functions for visualizing and exploring genetic association results. Association results from multiple phenotypes can be viewed simultaneously, over the entire genome (Manhattan plot) or in the more detailed regional view.