Two tiles fail due to KeyError in `skimage.measure.find_contours`
Closed this issue · 1 comments
robbibt commented
Contour extraction on two Albers tiles are currently failing with a KeyError
. This has been raised on the scikit-image
Github here:
scikit-image/scikit-image#4505
These two tiles may not be able to be processed until this bug has been resolved and the new version of scikit-image
made available on the NCI.
Error:
Traceback (most recent call last):
File "/g/data/r78/DEACoastLines/deacoastlines_statistics.py", line 137, in contours_to_multiline
for i in find_contours(da_i.data, z_value)
File "/g/data/v10/public/modules/dea-env/20200612/lib/python3.6/site-packages/skimage/measure/_find_contours.py", line 137, in find_contours
contours = _assemble_contours(segments)
File "/g/data/v10/public/modules/dea-env/20200612/lib/python3.6/site-packages/skimage/measure/_find_contours.py", line 174, in _assemble_contours
ends.pop(tail[-1])
KeyError: (66.0, 381)
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/g/data/r78/DEACoastLines/deacoastlines_statistics.py", line 1024, in <module>
main()
File "/g/data/r78/DEACoastLines/deacoastlines_statistics.py", line 923, in main
dim='year').set_index('year')
File "/g/data/r78/DEACoastLines/deacoastlines_statistics.py", line 196, in subpixel_contours
for i, da_i in da.groupby(dim)}
File "/g/data/r78/DEACoastLines/deacoastlines_statistics.py", line 196, in <dictcomp>
for i, da_i in da.groupby(dim)}
File "/g/data/r78/DEACoastLines/deacoastlines_statistics.py", line 143, in contours_to_multiline
fully_connected='high')
File "/g/data/v10/public/modules/dea-env/20200612/lib/python3.6/site-packages/skimage/measure/_find_contours.py", line 137, in find_contours
contours = _assemble_contours(segments)
File "/g/data/v10/public/modules/dea-env/20200612/lib/python3.6/site-packages/skimage/measure/_find_contours.py", line 174, in _assemble_contours
ends.pop(tail[-1])
KeyError: (1109.0, 15)
robbibt commented
Appears to be resolved in latest v1.0.0