Pinned Repositories
EPIC
Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
MetacellAnalysisToolkit
Toolkit for metacell analysis
MetacellAnalysisTutorial
Tutorial on construction and analysis of metacells
MixMHC2pred
HLA-II ligand predictor.
MixMHCp
Tool for motif deconvolution in large HLA-I ligand datasets
MixMHCpred
HLA-I ligand predictor
MixTCRpred
Predictor of TCR-epitope interactions
MoDec
Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.
PRIME
PRedictor of IMmunogenic Epitopes
SuperCell
Coarse-graining of large single-cell RNA-seq data into metacells
Computational Cancer Biology Lab's Repositories
GfellerLab/EPIC
Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
GfellerLab/SuperCell
Coarse-graining of large single-cell RNA-seq data into metacells
GfellerLab/MixMHC2pred
HLA-II ligand predictor.
GfellerLab/MixMHCpred
HLA-I ligand predictor
GfellerLab/MixTCRpred
Predictor of TCR-epitope interactions
GfellerLab/PRIME
PRedictor of IMmunogenic Epitopes
GfellerLab/MetacellAnalysisToolkit
Toolkit for metacell analysis
GfellerLab/MoDec
Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.
GfellerLab/MixMHCp
Tool for motif deconvolution in large HLA-I ligand datasets
GfellerLab/MetacellAnalysisTutorial
Tutorial on construction and analysis of metacells
GfellerLab/PhosMHCpred
Predictor of Phosphorylated HLA-I ligands
GfellerLab/SIB_workshop
GfellerLab/MHCpExt
Identification of N- and C-terminal extensions in HLA-I ligands
GfellerLab/EPIC-ATAC
GfellerLab/EPIC-ATAC_manuscript
Code used for the analyses performed in the EPIC-ATAC manuscript
GfellerLab/ggseqlogo
Publication-quality sequence logos in R
GfellerLab/DCApeptides
Extension of Direct Coupling Analysis to consider multiple ligands
GfellerLab/exercises_intro_bioinfo_clinique
GfellerLab/PLDpred
Predictions of peptide length distribution for HLA-I molecules
GfellerLab/SuperSpot