- Download any missing dependecies using
packages_download.R - Perform module identification with ACOxGS, GS, and/or LEAN using your dataset of choice through sample code in
testrun.R(includes KEGG network construction steps) andnetworkX.ipynb(for largest connected component extraction) - Perform enrichment and/or cross-study concordance analyses using
enrichment.Randconcordance.R, respectively