Pinned Repositories
MixTCRpred
Predictor of TCR-epitope interactions
dca2pdb
DCA_polymorphism_Ecoli
Decipher polymorphism in E. coli strains with coevolutionary models
DCA_SARS-CoV-2
Epistatic models predict mutable sites in SARS-CoV-2 proteins and epitopes
directACE
C++algorithm to obtain numerically approximate solutions of the direct Ising problem
ERGO-II
ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction
GiancarloCroce.github.io
IMMREP_2022_TCRSpecificity
ireceptor_script
Python script to search TCRs with specific CDR3 sequences in the iReceptor Gateway (https://gateway.ireceptor.org)
PhyDCA
Routine to predict interacting protein domains using co-evolutionary modeling
GiancarloCroce's Repositories
GiancarloCroce/PhyDCA
Routine to predict interacting protein domains using co-evolutionary modeling
GiancarloCroce/DCA_SARS-CoV-2
Epistatic models predict mutable sites in SARS-CoV-2 proteins and epitopes
GiancarloCroce/dca2pdb
GiancarloCroce/DCA_polymorphism_Ecoli
Decipher polymorphism in E. coli strains with coevolutionary models
GiancarloCroce/directACE
C++algorithm to obtain numerically approximate solutions of the direct Ising problem
GiancarloCroce/ERGO-II
ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction
GiancarloCroce/GiancarloCroce.github.io
GiancarloCroce/IMMREP_2022_TCRSpecificity
GiancarloCroce/ireceptor_script
Python script to search TCRs with specific CDR3 sequences in the iReceptor Gateway (https://gateway.ireceptor.org)
GiancarloCroce/kingfisher-download
Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
GiancarloCroce/mcmc_ising_potts
Montecarlo-metropolis algorithm for ising spin 0,1 / ising spin +1,-1 / generalised potts model