GiatrasKon

gastric-cancer-scRNAseq-data-analysis

This repository contains the code and data for the recreation and enrichment of the gastric (GC) cancer single-cell RNA-seq (scRNA-seq) data analysis pipeline described in the "Comprehensive analysis of metastatic gastric cancer tumour cells using single‑cell RNA‑seq" by Wang B. et. al, using the raw counts matrix they provide.

GiatrasKon/Algorithms-in-Structural-Bioinformatics-Assignments

GiatrasKon/Chromosome11-VariantCalling-GATK

A streamlined pipeline for germline variant calling on chromosome 11 using GATK. This repository includes workflows for data preprocessing, variant discovery, and annotation, with a focus on understanding genetic variations linked to disease-associated genes.

GiatrasKon/Clustering-Algorithms-Assignments

GiatrasKon/Gastric-Cancer-scRNAseq-Analysis

This repository contains the code and data for the recreation and enrichment of the gastric (GC) cancer single-cell RNA-seq (scRNA-seq) data analysis pipeline described in the "Comprehensive analysis of metastatic gastric cancer tumour cells using single‑cell RNA‑seq" by Wang B. et. al, using the raw counts matrix they provide.

GiatrasKon/Hyperspectral-Image-Clustering

This repository showcases the analysis of the Salinas hyperspectral image dataset using advanced clustering algorithms, focusing on identifying homogeneous regions in the image. It includes implementations of cost-function optimization and hierarchical clustering techniques, along with evaluations and visualizations in reduced-dimensional spaces.

GiatrasKon/Image-Processing-and-Analysis-Assignments

GiatrasKon/INDELseek-Optimized-Implementations

GiatrasKon/Machine_Learning_Assignments

GiatrasKon/ML-in-CompBio-Assignments

GiatrasKon/ProteinStructurePrediction-ComparativeStudy

GiatrasKon/PTEN-MolecularDynamics-DrugDesign