Gray Lab

Pinned Repositories

AlphaRED
AlphaFold-initiated replica exchange protein docking
Language:Python49 4 96
CAPSIF
CArbohydrate-Protein Site IdentiFier
Language:Jupyter Notebook10 2 00
deepH3-distances-orientations
Language:Python34 6 79
DeepSCAb
Language:Python3 1 02
DFMDock
DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.
Language:Python27 1 24
FLAb
Fitness landscapes for antibodies
Language:Python54 1 411
GeoDock
Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.
Language:Python87 5 1415
IgFold
Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
Language:Python336 12 6662
IgLM
Generative Language Modeling for Antibody Design
Language:Python130 4 925
MaskedProteinEnT
Language:Python11 2 14

Gray Lab's Repositories

Graylab/IgFold
Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
Language:Python336 12 6662
Graylab/IgLM
Generative Language Modeling for Antibody Design
Language:Python130 4 925
Graylab/GeoDock
Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.
Language:Python87 5 1415
Graylab/FLAb
Fitness landscapes for antibodies
Language:Python54 1 411
Graylab/AlphaRED
AlphaFold-initiated replica exchange protein docking
Language:Python49 4 96
Graylab/deepH3-distances-orientations
Language:Python34 6 79
Graylab/DFMDock
DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.
Language:Python27 1 24
Graylab/MaskedProteinEnT
Language:Python11 2 14
Graylab/CAPSIF
CArbohydrate-Protein Site IdentiFier
Language:Jupyter Notebook10 2 00
Graylab/DeepSCAb
Language:Python3 1 02
Graylab/graylab_config
This repository serves as a storage space for lab-wide resources, such as shell aliases, useful scripts, etc. Please include a descriptive comment for everything you add to this repository.
Language:Shell1 16 02
Graylab/Implicit-Membrane-Energy-Function-Benchmark
This is a set of scientific benchmark tests for evaluating membrane protein modeling energy functions. The test probe an energy function's ability to capture membrane protein orientation, stability, sequence, and structure. The methods are described in detail in the citations below.
Language:Scala1 2 0
Graylab/MPDock
This repository contains the dataset of 29 transmembrane protein complexes of different rigidity along with their unbound protein structure. Additionally, there are scripts to submit relaxing and docking complexes given there unbound monomer structures.
Language:Python1
Graylab/dotfiles
A collection of dotfiles for syncing multiple computers
Language:Python0 10 00