Grotjahn Lab
The Grotjahn lab at Scripps Research uses cryo-electron tomography to investigate mitochondrial function and regulation.
La Jolla, CA
Pinned Repositories
autolamella
filament_morphometrics
Morphometrics, Particle Picking, and Guided STA on Cytoskeletal Filaments from CryoET
GrotjahnLab.github.io
Grotjahn Lab Website
guided_tomo_align
Scripts for using references aligned to particles in 3D subvolumes in Chimera sessions for alignment
measure_models
Making measurements between subcellular models from cryoET
polyqIB
Software developed to analyze how polyQ inclusion bodies interact with ER membranes in situ
pycurv
Reliable estimation of membrane curvature for cryo-electron tomography
surface_morphometrics
Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging.
teamtomo.github.io
A collaborative knowledge sharing platform for the cryo-ET community
warp_lamella_adapters
A short optimized pipeline to get lamella tomography (with pretilt and with some tilts obscured or mistracked) to work well with Warp
Grotjahn Lab's Repositories
GrotjahnLab/surface_morphometrics
Morphometrics for Membrane Surfaces Segmented from Cryo-ET or other volumetric imaging.
GrotjahnLab/guided_tomo_align
Scripts for using references aligned to particles in 3D subvolumes in Chimera sessions for alignment
GrotjahnLab/warp_lamella_adapters
A short optimized pipeline to get lamella tomography (with pretilt and with some tilts obscured or mistracked) to work well with Warp
GrotjahnLab/GrotjahnLab.github.io
Grotjahn Lab Website
GrotjahnLab/measure_models
Making measurements between subcellular models from cryoET
GrotjahnLab/autolamella
GrotjahnLab/filament_morphometrics
Morphometrics, Particle Picking, and Guided STA on Cytoskeletal Filaments from CryoET
GrotjahnLab/polyqIB
Software developed to analyze how polyQ inclusion bodies interact with ER membranes in situ
GrotjahnLab/pycurv
Reliable estimation of membrane curvature for cryo-electron tomography
GrotjahnLab/teamtomo.github.io
A collaborative knowledge sharing platform for the cryo-ET community