Pinned Repositories
angdist
Plot the 2D histogram of Euler angles covered by a set of cryo-EM particles
chimerax-config
My configuration for UCSF ChimeraX
chimerax-viz
Visualizations of macromolecular structures with UCSF ChimeraX
classconvergence
Plot the class distribution as a function of iteration from a Class2D or Class3D job from RELION
countparticles
Report the number of particles in each class from a run_data.star file produced by RELION
cryoEM-scripts
Utilities to help cryoEM data analysis
julia-curve-fitting
Pluto notebook for curve fitting
localres
Plot the histogram of local resolution values of a cryo-EM reconstruction
rfret
Analyze FRET Binding Data with R
zotero-doi-link-quickcopy
"Copy Selected Items' DOIs to Clipboard" shortcut for Zotero
Guillawme's Repositories
Guillawme/chimerax-viz
Visualizations of macromolecular structures with UCSF ChimeraX
Guillawme/localres
Plot the histogram of local resolution values of a cryo-EM reconstruction
Guillawme/julia-curve-fitting
Pluto notebook for curve fitting
Guillawme/chimerax-config
My configuration for UCSF ChimeraX
Guillawme/cryoem-computing
Some scientific computing stuff
Guillawme/atuin-config
Configuration for atuin (shell history)
Guillawme/awesome-tips
Guillawme/BIUcontrol
Software to control the Back It Up device
Guillawme/clock-in-out
A simple tool to record time spent on a task
Guillawme/cryodrgn
Neural networks for cryo-EM reconstruction
Guillawme/cv-boilerplate
Programmatic generation of high-quality CVs
Guillawme/doom.d
Emacs configuration based on doom
Guillawme/gpkgs
Install R packages I use all the time
Guillawme/grid-freezing-components
3D printed and CNC milled components for home built grid freezing devices
Guillawme/Guillawme
Guillawme/helix-config
Confuration for helix (text editor)
Guillawme/insights-from-the-pdb
Various statistics on the Protein Data Bank
Guillawme/jekyll-now
Build a Jekyll blog in minutes, without touching the command line.
Guillawme/kitty-config
Configuration for kitty (terminal)
Guillawme/letter-boilerplate
Finest letter typesetting from the command line
Guillawme/model-angelo
Automatic atomic model building program for cryo-EM maps
Guillawme/moderntools
Modern problems require modern solutions.
Guillawme/Plastic_degrading_microbiome
Guillawme/publication_template
A template for writing scientific papers. View it in action here: https://andrewgyork.github.io/publication_template/
Guillawme/reaction-progress-simulation
Simplistic simulation of a population of particles stepping through a reaction and how the rate constant causes them to de-synchronize.
Guillawme/scripts
Various useful scripts
Guillawme/servalcat
Structure refinement and validation for crystallography and single particle analysis
Guillawme/SIOcontrol
SIO device control
Guillawme/starfile
RELION STAR files as pandas DataFrames
Guillawme/topaz
Pipeline for particle picking in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Also featuring micrograph and tomogram denoising with DNNs.