GulMuneerBaloch

GulMuneerBaloch's Stars

• SlavovLab/DART-ID_2018

  Code for figures/data analysis of the DART-ID publication

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• pycaret/pycaret

  An open-source, low-code machine learning library in Python

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• CornellCAC/jupyterlab2022

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• theislab/singlecell_proteomics

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• MannLabs/single-cell-DVP

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• coongroup/DeepProteomeSequencing-Software

  All code used for visualization in the manuscript "Global Detection of Human Variants and Isoforms by Deep Proteome Sequencing" is available here

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• richardxie1119/MEISTER

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• samgould2/p53-prime-editing-sensor

  Code for analysis of p53 prime editing sensor screening data

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• TommyHuang821/NTUT_110-2_MTA

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• Eirinits/AGS_synergies

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• kusterlab/ATLANTiC

  Integrated analysis of genomes, transcriptomes, proteomes and drug responses of cancer cell lines (CCLs) is an emerging approach to uncover molecular mechanisms of drug action. We extend this paradigm to measuring proteome activity landscapes by acquiring and integrating quantitative data for 10,000 proteins and 55,000 phosphorylation sites (p-sites) from 125 CCLs. These data are used to contextualize proteins and p-sites and predict drug sensitivity. For example, we find that Progesterone Receptor (PGR) phosphorylation is associated with sensitivity to drugs modulating estrogen signaling such as Raloxifene. We also demonstrate that Adenylate kinase isoenzyme 1 (AK1) inactivates antimetabolites like Cytarabine. Consequently, high AK1 levels correlate with poor survival of Cytarabine-treated acute myeloid leukemia patients, qualifying AK1 as a patient stratification marker and possibly as a drug target. We provide an interactive web application termed ATLANTiC (http://atlantic.proteomics.wzw.tum.de), which enables the community to explore the thousands of novel functional associations generated by this work.

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• PayneLab/ProteomicsEducation

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• jmwozniak/DizcoProcessing

  Dizco Processing Pipeline for Analyzing Chemoproteomic Photoaffinity Probe Site-of-Labeling Data

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• ding-lab/PanCan_snATAC_publication

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• ding-lab/phosphoproteomics

  Directory hosting scripts used for phosphoproteomics analysis.

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• scaramonche/EuBIC2020_Cytoscape

  Repository for workflows created during the Cytoscape hackathon at the EuBIC 2020 developer's meeting.

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• 41ison/Phosphoproteomics_quick_data_analysis_DIANN

  This repository share some basics for exploratory data analysis of phosphoproteomics data generated by DIA-NN.

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• GeostatsGuy/PythonNumericalDemos

  Well-documented Python demonstrations for spatial data analytics, geostatistical and machine learning to support my courses.

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• Villen-Lab/YeastPhosphoAtlasAnalysis

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• theislab/2022_Tritschler_pancreas_cross_species

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• nickdelgrosso/cph_pythonworkshop2018

  Workshop Materials: "Intro. to Scientific Programming with Python", given at the Panum University of Copenhagen in November 2018

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