Guliba

AAV

Scripts for analyzing PacBio AAV sequences

AiLearning

AiLearning: 机器学习 - MachineLearning - ML、深度学习 - DeepLearning - DL、自然语言处理 NLP

alphafold2

To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released

AmpSeq

Computational analysis of AmpSeq data for targeted comparative genomics

ArtificialFastqGenerator

Tool for generating artificial fastq files which can be used for testing the fidelity of NGS analysis pipelines.

awesome-alternative-splicing

Alternative splicing resource

bam-readcount

Count bases in BAM/CRAM files

Bioinformatic

Some small scripts，help yourself~

camelot

Camelot: PDF Table Extraction for Humans

centrifuge

Classifier for metagenomic sequences

Guliba/gpt_academic

为GPT/GLM等LLM大语言模型提供实用化交互接口，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, moss等。

Guliba/PAIRADISE

Paired Replicate Analysis of Allelic Differential Splicing Events

Guliba/pysam

Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

Guliba/drop

Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

Guliba/sleuth

Differential analysis of RNA-Seq

Guliba/ViennaRNA

The ViennaRNA Package

Guliba/ExpansionHunter

A tool for estimating repeat sizes

Guliba/AAV

Scripts for analyzing PacBio AAV sequences

Guliba/RSEM

RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

Guliba/styleguide

Style guides for Google-originated open-source projects

Guliba/excalibur

A web interface to extract tabular data from PDFs

Guliba/Sniffles

Structural variation caller using third generation sequencing

Guliba/Bioinformatic

Some small scripts，help yourself~

Guliba/pbsv

pbsv - PacBio structural variant (SV) calling and analysis tools

Guliba/hail

Scalable genomic data analysis.

Guliba/ML-NLP

此项目是机器学习(Machine Learning)、深度学习(Deep Learning)、NLP面试中常考到的知识点和代码实现，也是作为一个算法工程师必会的理论基础知识。

Guliba/leafcutter

Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard

Guliba/deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Guliba/img

Guliba/gnomad_mnv

Multi-nucleotide variants (MNVs) in gnomAD 2.1

Guliba/cufflinks

Productivity Tools for Plotly + Pandas

Guliba/bam-readcount

Count bases in BAM/CRAM files

Guliba/FVC

Guliba/centrifuge

Classifier for metagenomic sequences

Guliba/SpliceAI

A deep learning-based tool to identify splice variants

Guliba/NanoPlot

Plotting scripts for long read sequencing data

Guliba/camelot

Camelot: PDF Table Extraction for Humans

Guliba/pnet_prostate_paper

P-NET, Biologically informed deep neural network for prostate cancer classification and discovery

Guliba/fastp

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

Guliba/TrimGalore

A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data