GullyBurns
Research Scientist at CZI. Building 'Scientific Knowledge Engineering' tools and systems for the CZI Science Projects.
@chanzuckerberg Redwood City, CA
Pinned Repositories
.github
basic-jena-scripts
Some simple scripts to work with MONDO data
biomedical
Tools for curating biomedical training data for large-scale language modeling
chat-alhazen
Fork of chat-langchain with minimal edits for reuse on open-source tools.
cryoeto
databricks_to_nbdev_template
Template for nbdev projects
doccano
Open source text annotation tool for machine learning practitioner.
ipyannotate
Jupyter Widget for data annotation
meta-full-text-mining-ner
Open Source Code for Extraction of Methods and Datasets from Biomedical Papers
ro-biocuration2019
Research Object describing source code and data for Burns et al (2019)
GullyBurns's Repositories
GullyBurns/ipyannotate
Jupyter Widget for data annotation
GullyBurns/ro-biocuration2019
Research Object describing source code and data for Burns et al (2019)
GullyBurns/doccano
Open source text annotation tool for machine learning practitioner.
GullyBurns/meta-full-text-mining-ner
Open Source Code for Extraction of Methods and Datasets from Biomedical Papers
GullyBurns/.github
GullyBurns/basic-jena-scripts
Some simple scripts to work with MONDO data
GullyBurns/biomedical
Tools for curating biomedical training data for large-scale language modeling
GullyBurns/chat-alhazen
Fork of chat-langchain with minimal edits for reuse on open-source tools.
GullyBurns/cryoeto
GullyBurns/databricks_to_nbdev_template
Template for nbdev projects
GullyBurns/detecting-scientific-claim
Extracting scientific claims from biomedical abstracts (powered by AllenNLP), demo:
GullyBurns/docker-DataScience
Dockerfile base designed to provide a sharable, stable set of libraries for data science work. Thanks to the awesome Florian Geigl (@floriangeigl) for making his implementation available.
GullyBurns/drawio
Source to www.draw.io
GullyBurns/electron
:electron: Build cross-platform desktop apps with JavaScript, HTML, and CSS
GullyBurns/gpt-researcher
GPT based autonomous agent that does online comprehensive research on any given topic
GullyBurns/gullyburns.github.io
My professional blog: 'Scientific Knowledge Engineering Meets Data Science'.
GullyBurns/langchain_local_llm_dev
Developing local LLMs for use within LangChain
GullyBurns/Molecular_Interaction_Evidence_Fragment_Corpus
GullyBurns/nbdev-jekyll-theme
Porting the theme to CZI
GullyBurns/nextjs-template
Boilerplate to start with Docker setup (Next.js included)
GullyBurns/nxml2txt
NLM .nxml to text format conversion
GullyBurns/papermage
library supporting NLP and CV research on scientific papers
GullyBurns/pdf-tokens-type-labeler
GullyBurns/pdf_paragraphs_extraction
Copy of huridocs PDF extraction library
GullyBurns/pypdf
A pure-python PDF library capable of splitting, merging, cropping, and transforming the pages of PDF files
GullyBurns/rst-napari
Code for finding ontology term matches in Napari plugin descriptions
GullyBurns/scholarphi
An interactive PDF reader.
GullyBurns/scigraph-docker
SciGraph docker image and monarch specific configurations
GullyBurns/The-Spirit
WebGL Experiment
GullyBurns/UimaBioC
Simple interaction code to define the BioC as a UIMA type and provide support for it's use in text mining applications based on the CleartTk UIMA system.