GunhoChoi/Brain-MRI

<Brain MRI>

• Things to take care when dealing with brain MRI

Tutorials

• Nipype Beginner's Guide(http://miykael.github.io/nipype-beginner-s-guide/neuroimaging.html)

Data

• MS Lesion Segmentation(https://www.nitrc.org/projects/msseg/)

Preprocessing

Freeware

• Advanced Normalization Tools(http://stnava.github.io/ANTs/,https://github.com/ANTsX/ANTs/wiki/Compiling-ANTs-on-Linux-and-Mac-OS)
• FreeSurfer Software(https://surfer.nmr.mgh.harvard.edu)

Registration

• An Unsupervised Learning Model for Deformable Medical Image Registration(https://arxiv.org/pdf/1802.02604v1.pdf)
• A reproducible evaluation of ANTs similarity metric performance in brain image registration(https://www.sciencedirect.com/science/article/pii/S1053811910012061)

Others

• Simple ITK Notebook(https://github.com/SimpleITK/SimpleITK, https://github.com/InsightSoftwareConsortium/SimpleITK-Notebooks)
• IPAM(http://www.ipam.ucla.edu/programs/workshops/new-deep-learning-techniques/?tab=schedule,http://www.ipam.ucla.edu/abstract/?tid=14549&pcode=DLT2018)

NifTK

• https://github.com/NifTK/NiftyNet
• https://cmiclab.cs.ucl.ac.uk/CMIC/NiftyNetExampleServer/blob/master/dense_vnet_abdominal_ct_model_zoo.md
• https://cmiclab.cs.ucl.ac.uk/CMIC/NiftyNetExampleServer/blob/master/anisotropic_nets_brats_challenge_model_zoo.md