Pinned Repositories
AS_APA_JoVE
ATAC-seq
ATACseq
Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
bioinf545
ATAC-seq lab for BIOINF545
BIS2019_SC
BUS_notebooks_R
R vignettes for processing BUS format single-cell RNA-seq files
chipSeqTutorial
Tutorial on how to use MACS2 to explore ChIP-Seq data.
cnn-text-classification-tf
Convolutional Neural Network for Text Classification in Tensorflow
Gunjan-Dixit's Repositories
Gunjan-Dixit/AS_APA_JoVE
Gunjan-Dixit/ATAC-seq
Gunjan-Dixit/ATACseq
Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
Gunjan-Dixit/bioinf545
ATAC-seq lab for BIOINF545
Gunjan-Dixit/BIS2019_SC
Gunjan-Dixit/BUS_notebooks_R
R vignettes for processing BUS format single-cell RNA-seq files
Gunjan-Dixit/chipSeqTutorial
Tutorial on how to use MACS2 to explore ChIP-Seq data.
Gunjan-Dixit/cnn-text-classification-tf
Convolutional Neural Network for Text Classification in Tensorflow
Gunjan-Dixit/conquer_comparison
Code for evaluation of differential expression methods in single-cell RNA-seq data
Gunjan-Dixit/DEA.R
Script to automate differential expression analysis using DESeq2, edgeR or limma-voom
Gunjan-Dixit/deeplearning-biology
A list of deep learning implementations in biology
Gunjan-Dixit/DeepLearningImplementations
Implementation of some deep learning models
Gunjan-Dixit/DeepNuc
Convolutional Neural Networks (CNN) for nucleotide sequences implemented in Tensorflow
Gunjan-Dixit/docker-cheat-sheet
Docker Cheat Sheet
Gunjan-Dixit/dragonn
A toolkit to learn how to model and interpret regulatory sequence data using deep learning.
Gunjan-Dixit/dropEst
Pipeline for initial analysis of droplet-based single-cell RNA-seq data
Gunjan-Dixit/FactorNet
A deep learning package for predicting TF binding
Gunjan-Dixit/FIDDLE
Flexible Integration of Data with Deep LEarning
Gunjan-Dixit/In-depth-NGS-Data-Analysis-Course
Gunjan-Dixit/Leopard
Gunjan-Dixit/msmbuilder
Statistical models for biomolecular dynamics
Gunjan-Dixit/oshlack.github.io
Oshlack Lab website
Gunjan-Dixit/r-docker-tutorial
A docker tutorial for reproducible research
Gunjan-Dixit/r4ds
R for data science
Gunjan-Dixit/rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
Gunjan-Dixit/scATAC-benchmarking
Benchmarking computational single cell ATAC-seq methods
Gunjan-Dixit/tensorflow-without-a-phd
A crash course in six episodes for software developers who want to become machine learning practitioners.
Gunjan-Dixit/tidy2019
Tidyverse workshop at BioinfoSummer 2019
Gunjan-Dixit/training-collection
Collection of bioinformatics training materials
Gunjan-Dixit/tutorial_dl_for_genomics
A short tutorial to using DL and keras for genomics with sequence data.