Pinned Repositories
Archive
Chromatophore_Large_System_Simulation
Contain herein are scripts for making an all atom model of a chromatophore from Rhodobacter sphaeroides, as well as configuration scripts for MD and BD simulations of the aforementioned model using the simulation package NAMD. Additionally, there are scripts to run APBS calculations.
Develop-MCCE
This repo is code under development, some parts may not work properly.
mcce-toolbox
Tool scripts for MCCE program and data analysis.
MCCE_Benchmarking
For benchmarking MCCE experiments viz experimental pKas or viz other MCCE experiments (A/B testing)
RCs_parameters
Stable-MCCE
Stable version of MCCE.
GunnerLab's Repositories
GunnerLab/Stable-MCCE
Stable version of MCCE.
GunnerLab/mcce-toolbox
Tool scripts for MCCE program and data analysis.
GunnerLab/RCs_parameters
GunnerLab/Archive
GunnerLab/Chromatophore_Large_System_Simulation
Contain herein are scripts for making an all atom model of a chromatophore from Rhodobacter sphaeroides, as well as configuration scripts for MD and BD simulations of the aforementioned model using the simulation package NAMD. Additionally, there are scripts to run APBS calculations.
GunnerLab/Develop-MCCE
This repo is code under development, some parts may not work properly.
GunnerLab/MCCE_Benchmarking
For benchmarking MCCE experiments viz experimental pKas or viz other MCCE experiments (A/B testing)