GunzIvan28
Bioinformatics Data Scientist involved in designing NGS algorithms, pipelines and workflows
Pinned Repositories
16S-rRNA-analysis
16SrRNA-hex-tutorial
16S rRNA marker gene upstream and dowstream analysis tutorial for the UCT Hex cluster.
2018-Alliance-for-Global-Health-and-Science-Makerere-University_MCA
2018 Alliance for Global Health and Science, Makerere University, Microbial Community Analysis
2019-Winter-Bioinformatics_Command_Line_and_R_Prerequisites_Workshop
An introduction to the basics of bioinformatics for biologists. No data analysis experience necessary.
2019_April_ESALQ_Microbial_Community_Analysis
2019 April ESALQ Microbial Community Analysis in Piricicaba, State of Sao Paolo, Brazil
Python4Bioinformatics2019
Updated materials for MSc Bioinformatics for Pwani University
rMAP
Bacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics using WGS
waafle
WAAFLE (a Workflow to Annotate Assemblies and Find LGT Events) is a method for finding novel LGT (Lateral Gene Transfer) events in assembled metagenomes, including those from human microbiomes.
GunzIvan28's Repositories
GunzIvan28/rMAP
Bacterial analysis toolbox for full ESKAPE pathogen characterization and profiling the resistome, mobilome, virulome & phylogenomics using WGS
GunzIvan28/Python4Bioinformatics2019
Updated materials for MSc Bioinformatics for Pwani University
GunzIvan28/trial-cv
GunzIvan28/waafle
WAAFLE (a Workflow to Annotate Assemblies and Find LGT Events) is a method for finding novel LGT (Lateral Gene Transfer) events in assembled metagenomes, including those from human microbiomes.
GunzIvan28/african_genomics_medicine_portal
This is the African Genomic Medicine Portal that provides information about African genomics and variation with regards to pharmocology and disease. AGMP
GunzIvan28/ampseq_workflow
GunzIvan28/assignment-template
GunzIvan28/awesome-nextflow
A curated list of nextflow based pipelines
GunzIvan28/biobakery_workflows
bioBakery workflows is a collection of workflows and tasks for executing common microbial community analyses using standardized, validated tools and parameters.
GunzIvan28/CholerAegon
Pipeline for assembly and antimicrobial resistance gene detection
GunzIvan28/eanbit-mini-projects-2022
For the Residential Training Mini-projects
GunzIvan28/EasyAmplicon
Easy Amplicon data analysis pipeline
GunzIvan28/eTrack
GunzIvan28/free-programming-books
:books: Freely available programming books
GunzIvan28/Functions-in-python
Had a try out on functions in python and how we can use them.. tried out a function i could use to tell my customers the prices of snacks available on three days...
GunzIvan28/GrandChallengesAfrica-AMR-Reports
GunzIvan28/hAMRonization
Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure
GunzIvan28/IRIDA
GunzIvan28/mamba
The Fast Cross-Platform Package Manager
GunzIvan28/micropipe
A pipeline for high-quality bacterial genome construction using ONT sequencing
GunzIvan28/MscMak2022-IntroductionToPython
GunzIvan28/MscMak2024-IntroductionToPython
GunzIvan28/my-first-binder
test repo for binder
GunzIvan28/nextflow-rMAP-devt
GunzIvan28/pathogen-genomics-march-2024
A course on Pathogen Bioinformatics
GunzIvan28/pavian
🌈 Interactive analysis of metagenomics data
GunzIvan28/pdb-mini-project
GunzIvan28/pipecov
This project proposes to contribute to fill the knowledge gap about Covid-19SARS-CoV-2 in Brazil and with the global knowledge about the pathogen. The scientific community and governments of other countries are looking for actions along these lines. The United Kingdom recently established a research network for genomic studies of SARS-CoV-2Covid-19
GunzIvan28/QuasiFlow
A Nextflow Pipeline for Analysis of NGS-based HIV Drug Resistance Data
GunzIvan28/website-academic