Pinned Repositories
CMplot
📊 Circular and Rectangular Manhattan Plot
AtacAnnoR
An accurate and robust cross-modality cell type annotation method for scATAC-seq data
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
bap
Bead-based single-cell atac processing
basevar
This is the official development repository for BaseVar, which call variants for large-scale ultra low-pass (<1.0x) WGS data, especially for NIPT data
bayesR
Bayesian hierarchical model for complex trait analysis
cellranger
10x Genomics Single Cell Analysis
chromap
Fast alignment and preprocessing of chromatin profiles
CropGBM
DNBelab_C_Series_HT_scRNA-analysis-software
An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets
GuoChengying-7824's Repositories
GuoChengying-7824/rust-pseudoaligner
Single-Cell RNA-seq pseudo-aligner
GuoChengying-7824/scMultiome_analysis_vignette
Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis
GuoChengying-7824/AtacAnnoR
An accurate and robust cross-modality cell type annotation method for scATAC-seq data
GuoChengying-7824/pyo3-polars
Pyo3 extensions for polars
GuoChengying-7824/cellranger
10x Genomics Single Cell Analysis
GuoChengying-7824/scMVP
GuoChengying-7824/scATAC.Peak.annotation
tool to annotate scATAC Peaks and more
GuoChengying-7824/SnapATAC2
Single-cell epigenomics analysis tools
GuoChengying-7824/WindTerm
A professional cross-platform SSH/Sftp/Shell/Telnet/Serial terminal.
GuoChengying-7824/seqtk
Toolkit for processing sequences in FASTA/Q formats
GuoChengying-7824/sra-tools
SRA Tools
GuoChengying-7824/valiDrops
GuoChengying-7824/rcpp-gallery
Source code for the Rcpp Gallery website
GuoChengying-7824/scAVENGERS
GuoChengying-7824/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
GuoChengying-7824/scATAC-pro
A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data
GuoChengying-7824/introR
这是一本中文 R 语言入门书，基于最新 tidyverse 包。
GuoChengying-7824/epiScanpy
Episcanpy: Epigenomics Single Cell Analysis in Python
GuoChengying-7824/R_for_Data_Science
Materials for teaching R and tidyverse
GuoChengying-7824/chromap
Fast alignment and preprocessing of chromatin profiles
GuoChengying-7824/freebayes
Bayesian haplotype-based genetic polymorphism discovery and genotyping.
GuoChengying-7824/DNBelab_C_Series_HT_scRNA-analysis-software
An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets
GuoChengying-7824/PISA
A collection of tools to process single-cell omics datasets.
GuoChengying-7824/MetBrewer
Color palette package in R inspired by works at the Metropolitan Museum of Art in New York
GuoChengying-7824/shiny
Easy interactive web applications with R
GuoChengying-7824/ggthemr
Themes for ggplot2.
GuoChengying-7824/SCENIC
SCENIC is an R package to infer Gene Regulatory Networks and cell types from single-cell RNA-seq data.
GuoChengying-7824/Microbe-seq
Single-cell genomic sequencing of the human gut microbiome
GuoChengying-7824/ggtree
:christmas_tree:Visualization and annotation of phylogenetic trees
GuoChengying-7824/Rcpp
Seamless R and C++ Integration