Pinned Repositories
alignment-tools
Non-project-specific tools for processing alignment data.
array-tools
Programs used for array design
barcoding-post
Programs for processing data after barcode-identification
chipdip-pipeline
Pipeline to process sequencing reads from a ChIP-DIP experiment
guttmanlab-core
malat1
Repository for code associated with Malat1 projects
speckle
scripts and data from Bhat et al. speckle paper
sprite-pipeline
A self-contained repository of all code needed for SPRITE analysis
sprite2.0-pipeline
variant
Code for variant calling.
GuttmanLab's Repositories
GuttmanLab/sprite-pipeline
A self-contained repository of all code needed for SPRITE analysis
GuttmanLab/sprite2.0-pipeline
GuttmanLab/chipdip-pipeline
Pipeline to process sequencing reads from a ChIP-DIP experiment
GuttmanLab/barcoding-post
Programs for processing data after barcode-identification
GuttmanLab/alignment-tools
Non-project-specific tools for processing alignment data.
GuttmanLab/array-tools
Programs used for array design
GuttmanLab/guttmanlab-core
GuttmanLab/malat1
Repository for code associated with Malat1 projects
GuttmanLab/speckle
scripts and data from Bhat et al. speckle paper
GuttmanLab/variant
Code for variant calling.
GuttmanLab/bio
GuttmanLab/CLAPAnalysis
Pipeline for CLAP data analysis
GuttmanLab/galaxy-tools
Custom
GuttmanLab/gbtools
GuttmanLab/guttmanlab-capture
Tools to plan hybrid capture experiments, arrays
GuttmanLab/guttmanlab-editing
Packages to develop experiments and analyze data for genome editing methods
GuttmanLab/guttmanlab-sequential-barcode
Packages to manage and analyze data generated by the Guttman lab's sequential barcoding method.
GuttmanLab/htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
GuttmanLab/picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
GuttmanLab/scripts
Common location for general scripts