Health Data Research UK
Not-for-profit public organisation focused on unifying the UK health data asset for research and innovation
London
Pinned Repositories
CaRROT-CDM
covid-19
HDR UK - Resources for š¦ COVID-19 Research
datasets
HDR UK Gateway Datasets
gateway-api
HDR UK Gateway API
gateway-web
HDR UK Gateway Web
hackathon-projects-2025
Project code for Hackathon 2025.
hutch
Former repo for Hutch
oss
HDR UK OSS Contributions
papers
Extract of publications that mention HDR-UK
schemata
HDR UK Schemas
Health Data Research UK's Repositories
HDRUK/datasets
HDR UK Gateway Datasets
HDRUK/oss
HDR UK OSS Contributions
HDRUK/gateway-web
HDR UK Gateway Web
HDRUK/papers
Extract of publications that mention HDR-UK
HDRUK/CaRROT-CDM
HDRUK/gateway-api
HDR UK Gateway API
HDRUK/hackathon-projects-2025
Project code for Hackathon 2025.
HDRUK/DaCVaP
HDRUK/MedCAT
Medical Concept Annotation Tool
HDRUK/schemata-2
HDRUK/synthea
Synthetic Patient Population Simulator
HDRUK/uprn-match
HDRUK/fma-custodian-test-server
A test BE server for federated metadata automation
HDRUK/traser-mapping-files
HDRUK/bedtools2
bedtools - the swiss army knife for genome arithmetic
HDRUK/clockwork
CRyPTIC data processing pipelines
HDRUK/dpclust
Dirichlet Process based methods for subclonal reconstruction of tumours
HDRUK/gateway-2-integrations-testing
HDRUK/MedCATservice
Running MedCAT as a RESTful web service
HDRUK/MedCATweb
This repo provides a simple interface to inspect, improve and add concepts to biomedical NER+L model (e.g. MedCAT) and a further interface for research specific training data collection
HDRUK/MetaXcan
MetaXcan software and manuscript
HDRUK/mvGWAMA
Python script for multivariate GWAS meta-analysis
HDRUK/ontologies
HDRUK/OpenID-Connect-PHP
Minimalist OpenID Connect client
HDRUK/PGS_Catalog
An open database of polygenic scores and relevant metadata needed to apply and evaluate them correctly.
HDRUK/RDMP
Research Data Management Platform (RDMP) is an open source application for the loading,linking,anonymisation and extraction of datasets stored in relational databases.
HDRUK/seqtk
Toolkit for processing sequences in FASTA/Q formats
HDRUK/synthea-international
Synthea metadata and configuration files for international locations
HDRUK/tools
HDR UK Gateway Tools
HDRUK/tpot
A Python Automated Machine Learning tool that optimizes machine learning pipelines using genetic programming.