/WSI-Preprocess

scaling, filtering and tiling for WSIs

Primary LanguageJupyter Notebook

Whole Slide Image (WSI) Process

A. scaling

​ scaling the WSIs to specific scale and save to png format.

B. filter

​ filtering the scaled WSIs to get tissue mask.

C. tile

  1. generate annotation mask and standard mask
  2. tiling the WSIs to get tiles and their labels (class labels or masks) w.r.t tissue masks and annotations