HKU-BAL/ClairS

Empty VCF produced by ClairS

rowanhowellGE opened this issue · 2 comments

rowanhowellGE commented

Hi,

I ran a set of 21 tumour-normal pairs. All jobs completed successfully but 5 runs returned empty VCFs. Looking into the log file I found the following:

image

I am running ClairS v0.0.1 from dockerhub, accessed on January 23rd.

Thanks,
Rowan

zhengzhenxian commented

Hi, Rowan,

Thanks so much for reporting the issue. We have fixed the bug and please try to re-pull the docker image(You might need to remove your local image first using dcoker rmi hkubal/clairs:latest ). If the issue persists, please let us know, thanks!

Zhenxian

rowanhowellGE commented

Thanks, the latest version produced proper VCF files with variants in them.