ont
There are 34 repositories under ont topic.
LooseLab/readfish
CLI tool for flexible and fast adaptive sampling on ONT sequencers
nf-core/viralrecon
Assembly and intrahost/low-frequency variant calling for viral samples
HKU-BAL/ClairS
ClairS - a deep-learning method for long-read somatic small variant calling
HKU-BAL/ClairS-TO
ClairS-TO - a deep-learning method for tumor-only somatic variant calling
0neday/Exploit-HS8545M-ONT
Exploit Huawei ONT device, only support r019. You need to compile kernel module getshell.ko for r018 or r017 by yourself.
bpucker/MGSE
Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
0neday/OptiXstarHS8145X6
start shell scripts on hs8145x6 with full root privilege
dietvin/pod5Viewer
GUI for inspecting POD5 files
HKU-BAL/Clair3-RNA
Clair3-RNA - a long-read small variant caller for RNA sequencing data
HKU-BAL/MegaPath-Nano
MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read Metagenomics; MegaPath-Nano-Amplicon: filtering module for metagenomic amplicon data
mbhall88/fast5seek
Subset of fast5 files contained in a fastq, BAM, or SAM file.
marabouboy/FLAME
FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.
rnajena/read5
Wrapper to read fast5, slow5, blow5 and pod5 files.
Yedomon/Benchmarking-long-reads-assemblers-for-Fusarium-oxysporum-genus-genome-assembly
Benchmarking for long-reads assembler
rnajena/magnipore
Magnipore: Differential single nucleotide changes of ONT signals
marithetland/ONTmompS
Get L. pneumophila ST from long-read or hybrid assemblies.
wtsi-hpag/smis
SMIS: Single Molecular Integrative Scaffolding. A pipeline for scaffolding genome assemblies using long reads (PacBio, ONT)
CatMOD/CatMOD
CatMOD is a CatBoost-based feature-concatenation model for RNA modification recognition from ONT DRS.
chickenzord/go-huawei-client
Unofficial client library to get data from Huawei router
vincejv/gpon-parser
Parses and exports GPON Stats from ONT through Rest API (JSON format)
Albonycal/ONTDash
Custom Control Panel to manage Nokia ONT
collaborativebioinformatics/isocomp
Isocomp provides tools to compare any number of transcriptome assemblies (GTF + fasta) from long read RNAseq
jeancarloshs/provisionamento-v1
Projeto para Provisionar ONU/ONT na OLT Nokia
santiago-es/Telometer
A simple regular expression based method for measuring telomere length from long-read sequencing
EngineerMazid/ZNID-GPON-2424A-0ET
ZNID-GPON-2424A-0ET
jacobwindsor/tmerge
Build highly accurate transcripts from long-read RNA data
mcba1n/ont-docker
A quick guide to create Docker images for the Scrappie, Flappie, and Bonito basecallers by ONT.
wtsi-hpag/AncesBin
Pipeline to bin 10X, HiC, PacBio and ONT reads based on ancestry assemblies
YLeeHIT/ChinaMethAtlas
A comprehensive DNA methylation atlas for the Chinese population through nanopore long-read sequencing of 106 individuals
Larysha/ONT-shotgun-metagenomics
The analysis of shotgun metagenomic sequencing data generated from Oxford Nanopore Technology (ONT).
liviuspenter/ONT-lineage-tracing
Analyses of Penter, Borji & Nagler et al., Nature Communications 2024
rnajena/read5_ont
Wrapper to read fast5 and pod5 files.
collaborativebioinformatics/Mimic
Generates simulated ONT metegenomic samples based off existing microbiome sample abundances
jxzsxsp/ontology-php-sdk
本体PHP SDK