mzML validator

Question

mzML validator

Closed this issue 2 years ago · 4 comments

Hi,
I wonder where can I find the mzML validator now.
Thanks
Da

Answer 1 · 2020-01-07T09:58:05.000Z

Hi Da,
seems all sites where you could do online validation have shut down, at least to my knowledge. If you have singularity or docker on your system, you can use one of the OpenMS containers I built (docker pull mwalzer/openms-batteries-included:V2.3.0) and run the validator.

XMLValidator -schema <Schema to validate against>  -in <Your mzML file>

You can find the latest schema here
Idk about the jmzML validator, though.
HTH

Answer 2 · 2020-01-08T10:04:56.000Z

Hi Mathias,
Thanks. I'll give OpenMS a try and let you know if failed.
Da

Answer 3 · 2023-01-13T07:22:54.000Z

I think you can basically use any xml validator tool, you just have to pass in the file and the XSD schema.

Answer 4 · 2023-04-28T15:13:56.000Z

closing for now. Please reopen if this remains an issue.