Pinned Repositories
arnie
Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.
superfolder-covid-mrna-vaccines
SuperFolder COVID mRNA vaccines, stabilized for in vitro storage and shipping
af_backprop
AF_Cluster
Predict multiple protein conformations using sequence clustering and AlphaFold2.
alphafold
Open source code for AlphaFold.
array_fitting_tools
ChemEx
ChemEx is an analysis program for chemical exchange detected by NMR.
colab_exercises
Collection of colab notebooks for sharing
esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
Isoforms_benchmark_2024
HWaymentSteele's Repositories
HWaymentSteele/AF_Cluster
Predict multiple protein conformations using sequence clustering and AlphaFold2.
HWaymentSteele/Isoforms_benchmark_2024
HWaymentSteele/esm
Evolutionary Scale Modeling (esm): Pretrained language models for proteins
HWaymentSteele/af_backprop
HWaymentSteele/alphafold
Open source code for AlphaFold.
HWaymentSteele/array_fitting_tools
HWaymentSteele/ChemEx
ChemEx is an analysis program for chemical exchange detected by NMR.
HWaymentSteele/colab_exercises
Collection of colab notebooks for sharing
HWaymentSteele/ColabDesign
Making Protein Design accessible to all via Google Colab!
HWaymentSteele/deep_metad
Using neural networks for enhanced sampling in computational biophysics
HWaymentSteele/draw_rna
HWaymentSteele/controls_04feb2024
HWaymentSteele/HWaymentSteele.github.io
Build a Jekyll blog in minutes, without touching the command line.
HWaymentSteele/kinase_msm
set of scripts to analyze kinases
HWaymentSteele/LinearPartition
Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities
HWaymentSteele/msmbuilder
Statistical models for biomolecular dynamics
HWaymentSteele/NMR_scripts
Scripts for processing NMR data
HWaymentSteele/RDATKit
RNA Data (RDAT) read/write scripts
HWaymentSteele/SMURF
HWaymentSteele/tica_metadynamics
Efficient sampling of protein mutants via transfer learning from the wild-type simulation
HWaymentSteele/TMP_array_repo
TEMPORARY repo of array scripts. to be better incorporated in existing repos later.
HWaymentSteele/vde
Variational Autoencoder for Dimensionality Reduction of Time-Series