Haddox

bakerlab_dotfiles

Configuration files the way we like 'em

dualoptE

Code for optimizing Rosetta's energy function using features of small molecules and macromolecules

pandas_and_seaborn_tutorial

A short tutorial on Jupyter notebooks, pandas, and seaborn

prot_stab_analysis_pipeline

Pipeline for analyzing data from the high-throughput protein-stability assay from Rocklin et al, 2017, Science

protease_experimental_analysis

score_monomeric_designs

Computational pipeline for scoring protein designs using a variety of biophysical metrics

steric_clashing_metric

A metric for computing the number of atomic clashes in an input structure that are more extreme than clashes in native proteins

dms_tools2

software for the analysis and visualization of deep mutational scanning data

SangerMutantLibraryAnalysis

Analyze a mutant library based on the results from Sanger sequencing some selected clones

BTE

Cython API for the Mutation Annotated Tree (MAT) Online Phylogenetics Toolkit

Haddox/steric_clashing_metric

A metric for computing the number of atomic clashes in an input structure that are more extreme than clashes in native proteins

Haddox/score_monomeric_designs

Computational pipeline for scoring protein designs using a variety of biophysical metrics

Haddox/prot_stab_analysis_pipeline

Pipeline for analyzing data from the high-throughput protein-stability assay from Rocklin et al, 2017, Science

Haddox/bakerlab_dotfiles

Configuration files the way we like 'em

Haddox/dualoptE

Code for optimizing Rosetta's energy function using features of small molecules and macromolecules

Haddox/pandas_and_seaborn_tutorial

A short tutorial on Jupyter notebooks, pandas, and seaborn

Haddox/protease_experimental_analysis