An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets
- Propose
- An open source and flexible pipeline to analyze DNBelab C SeriesTM single-cell RNA datasets.
- Language
- Python3(>=3.8.*),R scripts
- Hardware/Software requirements
- x86-64 compatible processors.
- require at least 50GB of RAM and 4 CPU.
- centos 7.x 64-bit operating system (Linux kernel 3.10.0, compatible with higher software and hardware configuration).
- DNBC4tools config, software and script directories.
- doc Instruction for use.
- example Example of use the pipline.
- scripts Miscellaneous scripts.
- wdl WDL pipeline.
installation manual here
Create database manual here
Command line : Using the DNBC4tools
Container
WDL : Customize the config file, use wdl to analysis