Pinned Repositories
bioconda-recipes
Conda recipes for the bioconda channel.
CrossHyLight
CrossHyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NGS and 3rd generation sequencing to rapidly and accurately assemble highly complex metagenomic sequencing data.
cxxgit
learning c/c++
DiseaseCapsule
Predicting the prevalence of complex genetic diseases from individual genotype profiles using capsule networks
HaploKit.github.io
academic personal website
HERO
Hybrid error correction approach for long reads using overlap graph
HyLight
HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NGS and 3rd generation sequencing to rapidly and accurately assemble highly complex metagenomic sequencing data.
metagenome-asm
Enhancing long read based strain-aware metagenome assembly
Strainline
Full-length de novo viral haplotype reconstruction from noisy long reads
vechat
Correcting errors in noisy long reads using variation graphs
HaploKit's Repositories
HaploKit/vechat
Correcting errors in noisy long reads using variation graphs
HaploKit/Strainline
Full-length de novo viral haplotype reconstruction from noisy long reads
HaploKit/DiseaseCapsule
Predicting the prevalence of complex genetic diseases from individual genotype profiles using capsule networks
HaploKit/HERO
Hybrid error correction approach for long reads using overlap graph
HaploKit/HyLight
HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NGS and 3rd generation sequencing to rapidly and accurately assemble highly complex metagenomic sequencing data.
HaploKit/CrossHyLight
CrossHyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NGS and 3rd generation sequencing to rapidly and accurately assemble highly complex metagenomic sequencing data.
HaploKit/metagenome-asm
Enhancing long read based strain-aware metagenome assembly
HaploKit/bioconda-recipes
Conda recipes for the bioconda channel.
HaploKit/cxxgit
learning c/c++
HaploKit/HaploKit.github.io
academic personal website
HaploKit/phasebook
Haplotype aware de novo assembly of diploid genome from long reads
HaploKit/StrainXpress
StrainXpress is a de novo assembly method which base on overlap-layout-consensus (OLC) paradigm and can fast and accurately assemble high complexity metagenome sequencing data at strain resolution.
HaploKit/whatshap
Read-based phasing of genomic variants, also called haplotype assembly