Supplementary files and information for the PhD thesis of Mihails Delmans
The scipts in the timelapseProcessing folder contain implementation of the image-processing methods described in Section 2.4 of the thesis.
The scripts in the morphosolver folder contain implementation of the simulation described in Chapter 6 and Section 2.6 of the thesis.
The morphosolver/core contains the source code for solving problems of morphoelasticity.
The model.py contains the code of the simulation.
The sequences folder contains the plasmid sequences described in the Section 2.2 of the thesis.
The plasmid maps can be viewed at Benchling
The imagingGrowthChamber folder cointains OpenSCAD file with the parametric design, and 6x4 implementation of the growth chamber used for imaging of the gemmae.