Pinned Repositories
admixr
An R package for running ADMIXTOOLS analyses directly within R. See the project website at https://bodkan.net/admixr.
beast2-xml
Python code to generate BEAST2 XML files
chloroplast_genome_alignment
该项目包含一系列脚本，脚本可结合geneious软件对基因结构出现变化的叶绿体基因组编码区进行精确排序。The project includes a series of scripts that work with geneious software to alignment sequence the coding regions of the chloroplast genome where the gene structure has changed
DendroPy
A Python library for phylogenetic scripting, simulation, data processing and manipulation.
DiscoVista
ete
Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.
get_homology
This simple script is used to remove suspected non-homologous sites that appear after alignment.
get_homology_from_proteinortho
Extract orthologous genes based on the output of Proteinortho v5.
Hmmsearch_get_homology
使用hmmsearch程序，基于预先准备好的hmmer库，搜索几个物种之间的直系同源基因。
HyDe
Hybridization detection using phylogenetic invariants
HeJian151004's Repositories
HeJian151004/chloroplast_genome_alignment
该项目包含一系列脚本，脚本可结合geneious软件对基因结构出现变化的叶绿体基因组编码区进行精确排序。The project includes a series of scripts that work with geneious software to alignment sequence the coding regions of the chloroplast genome where the gene structure has changed
HeJian151004/get_homology_from_proteinortho
Extract orthologous genes based on the output of Proteinortho v5.
HeJian151004/admixr
An R package for running ADMIXTOOLS analyses directly within R. See the project website at https://bodkan.net/admixr.
HeJian151004/beast2-xml
Python code to generate BEAST2 XML files
HeJian151004/DendroPy
A Python library for phylogenetic scripting, simulation, data processing and manipulation.
HeJian151004/DiscoVista
HeJian151004/ete
Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.
HeJian151004/get_homology
This simple script is used to remove suspected non-homologous sites that appear after alignment.
HeJian151004/Hmmsearch_get_homology
使用hmmsearch程序，基于预先准备好的hmmer库，搜索几个物种之间的直系同源基因。
HeJian151004/HyDe
Hybridization detection using phylogenetic invariants
HeJian151004/manim
Animation engine for explanatory math videos
HeJian151004/phylip2eigenstrat
Python script to generate .snp and .ind Eigenstrat files from a PHYLIP infile
HeJian151004/treePL
Phylogenetic penalized likelihood
HeJian151004/wgd
Python package and CLI for whole genome duplication analyses