Helmchen Lab
Lab of Fritjof Helmchen at the Brain Research Institute at the University of Zurich
Zurich, Switzerland
Pinned Repositories
CaImAn_DendriteAnalysis
Jupyter notebooks for analysis of dendritic two-photon calcium imaging data using the CaImAn toolbox.
CaImAn_LocomotionAnalysis
Jupyter notebooks for analysis of Pia's two-photon calcium imaging data using the the CaImAn toolbox.
Cascade
Calibrated inference of spiking from calcium ΔF/F data using deep networks
Centripetal_propagation_astrocytes
Custom code (Python or Matlab) to compute centripetal propagation from astrocytic calcium recordings using pixel-wise correlation functions
contrast-marker-video-tracker
HHNE
Happy Hifo NWB Editor
manual-multisession-alignment
A tool for manually track neurons across days
mesostat-dev
A library for exploratory analysis of multivariate mesoscopic neuronal signals
OCIA
Calcium Imaging Analysis pipeline with a flexible framework
td_dendrites
Code to simulate the computational model for the manuscript 'Unsigned temporal difference errors in cortical apical dendrites during learning'
Helmchen Lab's Repositories
HelmchenLabSoftware/Cascade
Calibrated inference of spiking from calcium ΔF/F data using deep networks
HelmchenLabSoftware/Centripetal_propagation_astrocytes
Custom code (Python or Matlab) to compute centripetal propagation from astrocytic calcium recordings using pixel-wise correlation functions
HelmchenLabSoftware/OCIA
Calcium Imaging Analysis pipeline with a flexible framework
HelmchenLabSoftware/CaImAn_DendriteAnalysis
Jupyter notebooks for analysis of dendritic two-photon calcium imaging data using the CaImAn toolbox.
HelmchenLabSoftware/td_dendrites
Code to simulate the computational model for the manuscript 'Unsigned temporal difference errors in cortical apical dendrites during learning'
HelmchenLabSoftware/CaImAn_LocomotionAnalysis
Jupyter notebooks for analysis of Pia's two-photon calcium imaging data using the the CaImAn toolbox.
HelmchenLabSoftware/manual-multisession-alignment
A tool for manually track neurons across days
HelmchenLabSoftware/blink-detector-ipy3
A pipeline designed to process mouse blink videos, extract blink events and collect blinking statistics
HelmchenLabSoftware/CaImAn_legacy
HelmchenLabSoftware/contrast-marker-video-tracker
HelmchenLabSoftware/dlc-scripts
This library contains scripts for DeepLabCut used for joint and whisker tracking, as well as some auxiliary video processing scripts
HelmchenLabSoftware/HHNE
Happy Hifo NWB Editor
HelmchenLabSoftware/mesostat-dev
A library for exploratory analysis of multivariate mesoscopic neuronal signals
HelmchenLabSoftware/wilhelm-sych-tmaze-analysis
HelmchenLabSoftware/multiarea_learning_manuscript
Multiarea learning manuscript analysis code