HelmholtzAI-consultants-HMGU
Leading in applied AI by combining unique research questions, data and expertise with democratized access to new tools.
Munich, Germany
Pinned Repositories
ArtsyML
Code for blending people in images or videos with biological images using style transfer.
Automatic-Cell-Counter
A GUI based on napari for counting cells automatically in cell migration experiments
data-centric-platform
A tool for all-kinds segmentation in microscopy imaging which encourages data centric approaches
fg-clustering
Explainability for Random Forest Models.
Malis-Loss
Tensorflow and Pytorch Version of Malis Loss
napari-organoid-counter
A napari plugin for counting organoids from brightfield microscopy images with deep learning
oligo-designer-toolsuite
Develop custom oligo design pipelines.
PySDDR
A python package for semi-structured deep distributional regression
Quicksetup-ai
A flexible template, as a quick setup for deep learning projects in pytorch-lightning
XAI-Tutorials
Self-explanatory tutorials for different model-agnostic and model-specific XAI methods
HelmholtzAI-consultants-HMGU's Repositories
HelmholtzAI-Consultants-Munich/Quicksetup-ai
A flexible template, as a quick setup for deep learning projects in pytorch-lightning
HelmholtzAI-Consultants-Munich/XAI-Tutorials
Self-explanatory tutorials for different model-agnostic and model-specific XAI methods
HelmholtzAI-Consultants-Munich/Automatic-Cell-Counter
A GUI based on napari for counting cells automatically in cell migration experiments
HelmholtzAI-Consultants-Munich/fg-clustering
Explainability for Random Forest Models.
HelmholtzAI-Consultants-Munich/PySDDR
A python package for semi-structured deep distributional regression
HelmholtzAI-Consultants-Munich/Malis-Loss
Tensorflow and Pytorch Version of Malis Loss
HelmholtzAI-Consultants-Munich/oligo-designer-toolsuite
Develop custom oligo design pipelines.
HelmholtzAI-Consultants-Munich/napari-organoid-counter
A napari plugin for counting organoids from brightfield microscopy images with deep learning
HelmholtzAI-Consultants-Munich/data-centric-platform
A tool for all-kinds segmentation in microscopy imaging which encourages data centric approaches
HelmholtzAI-Consultants-Munich/ArtsyML
Code for blending people in images or videos with biological images using style transfer.
HelmholtzAI-Consultants-Munich/Echo2Pheno
A deep learning application to uncover echocardiographic phenotypes
HelmholtzAI-Consultants-Munich/EMcapsulins_segmentation
segmentation models for EMcapsulins segmentation
HelmholtzAI-Consultants-Munich/AURORA
WARNING: This code base is no longer supported. It still works, but we recommended using [BrainLes AURORA](https://github.com/BrainLesion/AURORA/) instead, which offers much more flexibility in a convenient PyPI package.
HelmholtzAI-Consultants-Munich/oligo-designer-toolsuite-AI-filters
AI plug-ins for the Oligo Designer Toolsuite package
HelmholtzAI-Consultants-Munich/DL-lecture-tutorials
Crash course on Introduction to AI and its medical applications. Tutorials with focus on intro to DL, overfitting, class imbalance.
HelmholtzAI-Consultants-Munich/automatedTesting
HelmholtzAI-Consultants-Munich/Colorectal-Cancer-Organoids-Detection
TODO
HelmholtzAI-Consultants-Munich/EffiDict
HelmholtzAI-Consultants-Munich/lightning-hydra-template
PyTorch Lightning + Hydra. A very user-friendly template for rapid, scalable and reproducible ML experimentation with best practices. ⚡🔥⚡
HelmholtzAI-Consultants-Munich/pytorch_fnet
A workflow for the generation of cell infection markers from brightfield microscopy images