HemaxiN
MSc degree in Biomedical Engineering. 🤓 Researcher in the area of computer vision and artificial intelligence applied to biomedical images.
Instituto Superior TécnicoPortugal
Pinned Repositories
3D_U-Vec
3D deep learning model to predict nucleus-Golgi vectors in 3D microscopy images of mouse retinas
3dunet
testing code for docker
3DVascNet
Official implementation of the paper: Narotamo, H., Silveira, M., & Franco, C. A. (2024). 3DVascNet: An Automated Software for Segmentation and Quantification of Mouse Vascular Networks in 3D. Arteriosclerosis, Thrombosis, and Vascular Biology.
3DVox2Vox
Official implementation of the paper accepted for presentation at EMBC 2022: "Synthetic Generation of 3D Microscopy Images using Generative Adversarial Networks"
3DYOLO
3D Implementation of the Tiny Yolo v2 model to jointly detect nucleus-Golgi pairs in 3D Microscopy Images
Cell-Nucleus-and-Membrane-Segmentation-and-Feature-Extraction
DL_ECG_Classification
Official implementation of the paper: "Deep learning for ECG classification: A comparative study of 1D and 2D representations and multimodal fusion approaches"
InterphaseCellCycleStaging
Official implementation of the paper: "Narotamo, H., Fernandes, M. S., Moreira, A. M., Melo, S., Seruca, R., Silveira, M., & Sanches, J. M. (2021). A machine learning approach for single cell interphase cell cycle staging. Scientific reports."
VesselVio
VesselVio is an open-source application for the analysis and visualization of segmented vasculature datasets
YOLO_UNET
Official implementation of the paper: "Narotamo, H., Sanches, J. M., & Silveira, M. (2019, July). Segmentation of Cell Nuclei in Fluorescence Microscopy Images Using Deep Learning. "
HemaxiN's Repositories
HemaxiN/DL_ECG_Classification
Official implementation of the paper: "Deep learning for ECG classification: A comparative study of 1D and 2D representations and multimodal fusion approaches"
HemaxiN/InterphaseCellCycleStaging
Official implementation of the paper: "Narotamo, H., Fernandes, M. S., Moreira, A. M., Melo, S., Seruca, R., Silveira, M., & Sanches, J. M. (2021). A machine learning approach for single cell interphase cell cycle staging. Scientific reports."
HemaxiN/3DVascNet
Official implementation of the paper: Narotamo, H., Silveira, M., & Franco, C. A. (2024). 3DVascNet: An Automated Software for Segmentation and Quantification of Mouse Vascular Networks in 3D. Arteriosclerosis, Thrombosis, and Vascular Biology.
HemaxiN/YOLO_UNET
Official implementation of the paper: "Narotamo, H., Sanches, J. M., & Silveira, M. (2019, July). Segmentation of Cell Nuclei in Fluorescence Microscopy Images Using Deep Learning. "
HemaxiN/3D_U-Vec
3D deep learning model to predict nucleus-Golgi vectors in 3D microscopy images of mouse retinas
HemaxiN/3DVox2Vox
Official implementation of the paper accepted for presentation at EMBC 2022: "Synthetic Generation of 3D Microscopy Images using Generative Adversarial Networks"
HemaxiN/3DYOLO
3D Implementation of the Tiny Yolo v2 model to jointly detect nucleus-Golgi pairs in 3D Microscopy Images
HemaxiN/3dunet
testing code for docker
HemaxiN/Cell-Nucleus-and-Membrane-Segmentation-and-Feature-Extraction
HemaxiN/VesselVio
VesselVio is an open-source application for the analysis and visualization of segmented vasculature datasets
HemaxiN/3DImageNormalization
HemaxiN/ClearMap2
ClearMap 2.0 with WobblyStitcher, TubeMap and CellMap
HemaxiN/3DArtificialVision
PhD Project - Hemaxi Narotamo
HemaxiN/3DCellPol
Official implementation of 3DCellPol an automated approach for joint detection and pairing of cell organelles
HemaxiN/Butterfly_CNN
CNN’s for detection and measurement of butterfly eyespot patterns
HemaxiN/conv_index_iris_filter
Implementation of the iris filter to obtain the gradient convergence maps of nuclei in microscopy images. Developed for the paper: "Narotamo, H., Sanches, J. M., & Silveira, M. (2020, July). Combining deep learning with handcrafted features for cell nuclei segmentation."
HemaxiN/EC_analysis
Code for the study "Eph-ephrin signaling couples endothelial cell sorting and arterial specification" by Stewen J, Kruse K, Godoi-Filip AT, Jeong H, Adams S, Berkenfeld F, Stehling M, Red-Horse K, Adams RH, Pitulescu ME
HemaxiN/HemaxiN
HemaxiN/Mask_RCNN
Mask R-CNN for object detection and instance segmentation on Keras and TensorFlow
HemaxiN/Polarity-Vectors
A Deep-Learning Approach for Vectors Prediction in 3D Microscopy Images
HemaxiN/SciTSR
Table structure recognition dataset of the paper: Complicated Table Structure Recognition
HemaxiN/stardist
StarDist - Object Detection with Star-convex Shapes
HemaxiN/transpose_masks_3DVascNet
Simple app to transpose the channels of the output masks of 3DVascNet, to visualize them correctly in Fiji and Imaris.
HemaxiN/VectorAnnotationTool
Simple tool for 3D nucleus-Golgi polarity vector annotation.
HemaxiN/XML-files-based-on-Pascal-VOC-format-from-binary-segmentation-masks