Hendricks27

Hendricks27's Stars

• eblerjana/pangenie

  Pangenome-based genome inference

  Language:C++11711

• foxsen/zotero-selfhost

  Zotero platform organized for selfhosting

  Language:Shell13213

• exaloop/codon

  A high-performance, zero-overhead, extensible Python compiler using LLVM

  Language:C++15.2k523

• Dfam-consortium/TETools

  Dfam Transposable Element Tools Docker container.

  Language:Perl8617

• lidaof/iteres

  Get repeat alignment statistic from BAM/SAM file

  Language:C11

• ggonnella/gfaviz

  Graphical interactive tool for the visualization of sequence graphs in GFA format.

  Language:C++652

• TF-Chan-Lab/panGraphViewer

  Show pangenome graphs in an easy way

  Language:JavaScript545

• zotero/dataserver

  Zotero Data Server

  Language:PHP28674

• SchedMD/slurm

  Slurm: A Highly Scalable Workload Manager

  Language:C2.8k674

• standage/sequniq

  Language:Python2

• chanzuckerberg/czid-dedup

  deduplicate FASTA and FASTQ files

  Language:Rust192

• OpenGene/fastp

  An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

  Language:C++2k334

• ggonnella/gfapy

  Gfapy: a flexible and extensible software library for handling sequence graphs in Python

  Language:Python667

• GFA-spec/GFA-spec

  Graphical Fragment Assembly (GFA) Format Specification

  Language:Makefile20342

• ComparativeGenomicsToolkit/cactus

  Official home of genome aligner based upon notion of Cactus graphs

  Language:C534111

• lmdu/pyfastx

  a python package for fast random access to sequences from plain and gzipped FASTA/Q files

  Language:C27123

• RapidsAtHKUST/hga

  Heterogeneous Graph Aligner

  Language:Cuda61

• smarco/gem3-mapper

  GEM-Mapper v3

  Language:C5717

• heathsc/gemBS

  gemBS is a bioinformatics pipeline designed for high throughput analysis of DNA methylation from Whole Genome Bisulfite Sequencing data (WGBS).

  Language:Python3321

• FelixKrueger/Bismark

  A tool to map bisulfite converted sequence reads and determine cytosine methylation states

  Language:HTML402103

• higlass/higlass

  Fast, flexible and extensible genome browser.

  Language:JavaScript31452

• ysora/stripenn

  Architectural stripe detection from 3D genome conformation data

  Language:Python173

• human-pangenomics/hpp_production_workflows

  WDL’s and Dockerfiles for assembly QC process

  Language:Jupyter Notebook6314

• maickrau/GraphAligner

  Language:C++26333

• BojarLab/glycowork

  Package for processing and analyzing glycans and their role in biology.

  Language:Jupyter Notebook5713

• The-Mitra-Lab/pycallingcards_data

  Reference data for pycallingcards

  Language:Jupyter Notebook4

• vgteam/vg

  tools for working with genome variation graphs

  Language:C++1.1k195

• kbtxwer/IELTS

  剑桥雅思

  Language:HTML736197

• shawnzhangyx/cvdc_scripts

  scripts for analyzing the CVDC data.

  Language:R173

• lidaof/eg-react

  WashU Epigenome Browser

  Language:JavaScript6930