/PointFISH

Python scripts used for the paper "PointFISH: learning point cloud representations for RNA localization patterns" published in ECCV 2022 BioImage Computing workshop.

Primary LanguagePythonBSD 3-Clause "New" or "Revised" LicenseBSD-3-Clause

PointFISH

License

This repository gathers the code used for the following paper published in ECCV 2022 BioImage Computing workshop:

Title: PointFISH: learning point cloud representations for RNA localization patterns

Authors: Arthur Imbert1,2,3*, Florian Mueller4, 5, Thomas Walter1,2,3*

1Centre for Computational Biology, Mines Paris, PSL University, Paris, France
2Institut Curie, PSL University, Paris, France
3INSERM, U900, Paris, France
4Imaging and Modeling Unit, Institut Pasteur and UMR 3691 CNRS, Paris, France
5C3BI, USR 3756 IP CNRS, Paris, France

*To whom correspondence should be addressed.

Pipeline

Below, we list the different steps performed in the paper:

  1. simulate_patterns.py
  2. build_tfrecords_clf.py
  3. train_clf.py