HenrikBengtsson/CBI-software

Issues

• Observation - Automated timeout seems to happen when long-running package installs are happening.

  #73 opened 2 years ago
  2

• R: Assert 'java' and 'javac' are of same version

  #72 opened 2 years ago
  1

• Avoid _JAVA_OPTIONS warning by explicitly unset for tools setting option

  #71 opened 2 years ago
  0

• shellharden: build from source

  #70 opened 2 years ago
  0

• picard: rename 'picard' to 'PicardCommandLine':

  #69 opened 2 years ago
  0

• libarrow: Provide pre-built/pre-compiled version to speed up R installation of 'arrow'

  #68 opened 2 years ago
  0

• kallisto 0.48.0: libstdc++.so.6 errors

  #67 opened a year ago
  4

• conda-stage: assert that shell is bash and not only sh

  #66 opened 2 years ago
  0

• picard & snpeff: Use functions instead of aliases(?)

  #65 opened a year ago
  1

• miniconda: auto source to avoid need for 'conda init'

  #64 opened 3 years ago
  1

• R: Set CMAKE_BIN=$(command -v cmake3)

  #63 opened 3 years ago
  1

• R: Configure JAVA_HOME before 'build'

  #62 opened 2 years ago
  4

• R: rJava::.jinit() stalls when installed with gcc 11.2.1

  #61 opened a year ago
  8

• conda-stage: warn when used in non-bash shell

  #60 opened 3 years ago
  0

• Don't expand env vars when creating aliases

  #59 opened 3 years ago
  1

• R: Find a more stable JAVA_HOME path

  #58 opened 3 years ago
  2

• rstudio-server: make config fails with v2022.02.1-461

  #57 opened 3 years ago
  1

• SOFTWARE: pdfcrop

  #56 opened a year ago
  2

• r: Make agile to actual GCC version used

  #55 opened 2 years ago
  0

• Question for my own education

  #54 opened 3 years ago
  6

• TESTS: Add unit test for installed software

  #53 opened a year ago
  1

• fzf: formatting issue

  #52 opened 3 years ago
  0

• hisat2: Installed files are writable by group(!)

  #51 opened 3 years ago
  1

• gistic2: Installed files are writable by group and some by other(!)

  #50 opened 3 years ago
  2

• IGV: Installed files are writable by group(!)

  #49 opened 3 years ago
  1

• rstudio-server: rsession --version gives a generic dev version

  #48 opened 2 years ago
  1

• ROBUSTNESS: Remove write permission for user who does the installation

  #47 opened 3 years ago
  1

• Cutadapt make - python2 module

  #46 opened 3 years ago
  11

• Installing on Centos7

  #45 opened 3 years ago
  3

• Java: Make Java respect scheduler memory limits

  #44 opened 3 years ago
  0

• make TMPDIR optional for installing software

  #43 opened 3 years ago
  0

• Load multiple versions of a module

  #42 opened 3 years ago
  0

• JupyterLab: Some notes

  #41 opened 3 years ago
  2

• User request for older star version

  #40 opened 3 years ago
  4

• Java: Make Java respect TMPDIR

  #39 opened 3 years ago
  1

• rstudio: limit the number of threads?

  #38 opened 3 years ago
  0

• Detect when RPATH is used

  #37 opened a year ago
  2

• GEOS: new url and new version

  #36 opened 3 years ago
  1

• Modules: Use Lua multi-line strings for the 'Description:' entries

  #35 opened 3 years ago
  0

• Add Maintainer field

  #34 opened 3 years ago
  2

• Question regarding scl-devtoolset conversion to module

  #33 opened 3 years ago
  9

• SOFTWARE: DMTCP - checkpointing processes

  #32 opened 3 years ago
  2

• R: Need to rerun `R CMD javareconf` whenever a new Java version is installed

  #31 opened 3 years ago
  5

• Modules: Add customized links to documentation, support, source code, ...

  #30 opened 3 years ago
  2

• BUG: openjdk broken because version is too specific and out of sync

  #29 opened 3 years ago
  0

• Modules: Add 'ChangeLog: <URL>' component for all software tools

  #28 opened 3 years ago
  2

• UPDATE: September 2021

  #27 opened 3 years ago
  1

• SOFTWARE: GISTIC 2.0

  #26 opened 3 years ago
  0

• DOCS: Add README.md

  #25 opened 3 years ago
  1

• R: Building R with SCL add dependents on SCL libraries

  #24 opened 3 years ago
  0