HenrikBengtsson/CBI-software

Issues

• cutadapt: Specific to Linux distribution

  #102 opened 5 months ago by HenrikBengtsson
  3

• jq: Configure also header include path and PKG_CONFIG_PATH

  #123 opened 7 months ago by HenrikBengtsson
  0

• HPC deployment: Distribute software stack via fast read-only file system

  #122 opened 8 months ago by HenrikBengtsson
  0

• nvtop

  #121 opened 9 months ago by HenrikBengtsson
  0

• ncdu: additional example

  #120 opened 10 months ago by HenrikBengtsson
  0

• SOFTWARE: visidata

  #119 opened a year ago by HenrikBengtsson
  0

• R: Make renv use file paths that are specific to also the Linux distribution

  #118 opened a year ago by HenrikBengtsson
  4

• Install R (<= 3.3.0) with zlib >= 1.2.10

  #116 opened a year ago by HenrikBengtsson
  1

• Install R (< 3.0.0)

  #117 opened a year ago by HenrikBengtsson
  0

• R: capabilities("tcltk") on Wynton's Rocky 8 nodes

  #110 opened a year ago by HenrikBengtsson
  3

• cpan-config: Generic CPAN configuration?

  #115 opened a year ago by HenrikBengtsson
  0

• plink2: Does it hijack all CPU cores by default?

  #114 opened a year ago by HenrikBengtsson
  0

• Cell Ranger 7.2.0 is available

  #113 opened a year ago by HenrikBengtsson
  1

• r-siteconfig: Linux distro-specific (...or ?)

  #109 opened a year ago by HenrikBengtsson
  1

• Wynton: Broken modules

  #112 opened a year ago by HenrikBengtsson
  8

• gistic2: Installation PREFIX not accessible by 'other'

  #111 opened a year ago by HenrikBengtsson
  1

• Closed source software

  #108 opened a year ago by HenrikBengtsson
  0

• Software tools that install absolute paths (n=15)

  #106 opened a year ago by HenrikBengtsson
  2

• CBI software that rely on RUNPATH (n=3)

  #107 opened a year ago by HenrikBengtsson
  0

• bashdb: broken

  #91 opened a year ago by HenrikBengtsson
  2

• r: Set Java 1.8 as the default for Rocky 8; somehow it picked up Java 11

  #105 opened a year ago by HenrikBengtsson
  1

• CentOS 7/Rocky 8: Missing libraries

  #104 opened a year ago by HenrikBengtsson
  1

• gistic2: Missing libraries on CentOS 7 and Rocky 8

  #100 opened a year ago by HenrikBengtsson
  1

• Rocky 8: Undo distro-specific installs for htop, mc, and samtools?

  #103 opened a year ago by HenrikBengtsson
  0

• CentOS 7 -> Rocky 8 compatibility

  #93 opened a year ago by HenrikBengtsson
  6

• gatk: Exception in thread "main" java.lang.UnsupportedClassVersionError: org/broadinstitute/hellbender/Main has been compiled by a more recent version of the Java Runtime (class file version 61.0), this version of the Java Runtime only recognizes class file versions up to 52.0

  #101 opened a year ago by HenrikBengtsson
  1

• TESTS: assert that is indeed the install target that is found

  #84 opened a year ago by HenrikBengtsson
  0

• mutect: Requires Java 1.7

  #99 opened a year ago by HenrikBengtsson
  1

• Rocky8: Add scl-gcc-toolset/{9,10,11,12} modules

  #98 opened a year ago by HenrikBengtsson
  1

• Set default version and hide versions on some Linux distributions

  #97 opened a year ago by HenrikBengtsson
  2

• How to identify Linux distribution CentOS 7 or Rocky 8

  #96 opened a year ago by HenrikBengtsson
  0

• blat: check error

  #92 opened a year ago by HenrikBengtsson
  0

• BUG: Non-existing LD_LIBRARY_PATH set in the 'r' module

  #94 opened a year ago by HenrikBengtsson
  0

• ROBUSTNESS: Assert that all paths set exist

  #95 opened a year ago by HenrikBengtsson
  2

• rstudio: $HOME/.config/rstudio/config.json becomes world writable

  #90 opened a year ago by HenrikBengtsson
  0

• R 4.3.0: Test installing on C4

  #89 opened a year ago by HenrikBengtsson
  2

• Move away from aliases to functions

  #75 opened a year ago by HenrikBengtsson
  0

• miniconda3-py39: secure ~/.conda/ file permissions on load(?)

  #76 opened 2 years ago by HenrikBengtsson
  0

• miniconda3-py39 & miniconda3-py310: Move to miniconda/3-py39, miniconda/3-py310

  #88 opened a year ago by HenrikBengtsson
  1

• GDAL: Compile and depend on a modern SQLite version

  #86 opened 2 years ago by HenrikBengtsson
  2

• SOFTWARE: AppScope

  #87 opened 2 years ago by HenrikBengtsson
  0

• CRIU: A checkpointing software

  #85 opened 2 years ago by HenrikBengtsson
  1

• TESTS: Add man page tests

  #83 opened 2 years ago by HenrikBengtsson
  0

• TESTS: Add test for help output

  #82 opened 2 years ago by HenrikBengtsson
  0

• TESTS: Missing version tests

  #81 opened 2 years ago by HenrikBengtsson
  0

• R: Detect when Conda is installed and active - if so, refuse to load the module

  #80 opened 2 years ago by HenrikBengtsson
  7

• Common linting tools

  #79 opened 2 years ago by HenrikBengtsson
  0

• RStudio Server: v2022.07.2-576 does not work in multi-tenant environments

  #78 opened 2 years ago by HenrikBengtsson
  2

• rstudio-server: installation issues

  #77 opened 2 years ago by HenrikBengtsson
  1

• README: Add requirements

  #74 opened 2 years ago by HenrikBengtsson
  0