Attention-Based Spatio-Temporal-Spectral Feature Learning for Subject-Specific EEG Classification

This repo contains the implementation of the 9th IEEE international winter conference on brain-computer-interface paper, Attention-Based Spatio-Temporal-Spectral Feature Learning for Subject-Specific EEG Classification .

1. Abstract

Brain-computer interface (BCI) is a system that recognizes the human intentions from the brain signals for communication with external devices. The electroencephalography (EEG) signals are commonly used for motor imagery based brain-computer interface (MI-BCI) due to non-invasive, cost-effective, and portable manner. For the analysis of the EEG signals, there are several machine learning and deep learning methods. However, the majority of those methods have limitations of not considering the distinct frequency bands for subject-specific manner. Therefore, we propose the method that pays attention to the significant frequency bands for each subject and also extracts the spatio-temporal-spectral features simultaneously. We utilize filter bank, sliding window segmentation, and the convolutional neural network (CNN) to extract the spatio-temporal features with consideration of multiple frequency bands. Then, we employ the sub-band attention to determine the significant information of each frequency band. Finally, the attention-based Bi-directional Long-Short Term Memory (Bi-LSTM) is implemented to extract the temporal dynamic features. Our proposed method is evaluated on the BCI Competition IV-2a dataset by using two classes in the subject-specific manner. The experimental results demonstrate that our proposed method is effective to focus on the significant frequency band for each subject.

2. Installation

Environment

Python == 3.7.10
PyTorch == 1.9.0
CUDA == 11.0

Dependencies

Create conda environment

conda == 4.10.1

(Option 1) Using yaml file

conda env create --file bci-2021.yaml

(Option 2) Install packages manually

conda install pytorch=1.9.0 cudatoolkit=11.1 -c pytorch -c nvidia
conda install numpy pandas matplotlib pyyaml ipywidgets
pip install torchinfo braindecode moabb

3. Directory structure

.
├── README.md
├── base
│   └── base_trainer.py
├── bci-2021.yaml
├── configs
│   └── bci2021_config.yaml
├── data_loader
│   ├── __pycache__
│   ├── data_generator.py
│   ├── dataset
│   └── preprocessor.py
├── figures
│   └── figure.png
├── history.ipynb
├── main.py
├── models
│   ├── __pycache__
│   ├── bci2021_model.py
│   └── model_builder.py
├── runs
│   ├── train_all_subject.sh
│   └── train_single_subject.sh
├── trainers
│   ├── __pycache__
│   ├── bci2021_trainer.py
│   └── trainer_maker.py
└── utils
├── calculator.py
├── get_args.py
├── logger.py
└── utils.py

4. Dataset

Use braindecode

BCI Competition IV-2a dataset

9 subjects
Classes: left hand, right hand (2 classes)
Session-to-session set up (=subject dependent)
Training set: 144 trials per subject
Test set: 144 trials per subject

Preprocessing

Sampling rate: 250Hz
Time segment: [-0.5, 4.0]s post-cue
Band-pass filtering: 0-42Hz
Normalization: exponential moving average

5. Experiments

Models	S01	S02	S03	S04	S05	S06	S07	S08	S09	Mean
BCI-2021	97.92	71.53	97.22	84.72	72.92	74.31	99.31	84.03	97.22	86.58

6. Get Started

Training all subjects

sh runs/train_all_subject.sh

Training single subject

sh runs/train_single_subject.sh

Visualization

Please note that history.ipynb file

Citation

If you find this repository useful for your publications, please consider citing our paper.

@INPROCEEDINGS{ko2021bci,
  title={Attention-based spatio-temporal-spectral feature learning for subject-specific EEG classification}, 
  author={Ko, Dong-Hee and Shin, Dong-Hee and Kam, Tae-Eui},
  booktitle={2021 9th International Winter Conference on Brain-Computer Interface (BCI)},
  pages={1-4},
  year={2021}
}

High-East/Attention-based-spatio-temporal-spectral-feature-learning-for-subject-specific-EEG-classification