Circular_Genome-mutationPointOffsetRange causes segfault
VincentRagusa opened this issue · 7 comments
VincentRagusa commented
In circular genome:
mutationPointOffsetRange = 1.0 #(double) range of PointOffset mutation
the default value of the parameter is 1.0 and is described as a double value, but the value 0.1 causes a segfault.
cliff-bohm commented
Yea, I'm aware there is an issue there. Contracts, you are the first person
to use this who is not me. Someone needs to take a look and make a fix.
…On Mon, Jul 13, 2020 at 12:03 PM Vincent Ragusa ***@***.***> wrote:
In circular genome:
mutationPointOffsetRange = 1.0 #(double) range of PointOffset mutation
the default value of the parameter is 1.0 and is described as a double
value, but the value 0.1 causes a segfault.
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cliff-bohm commented
... and by "someone", I mean I'll take a look...
…On Mon, Jul 13, 2020 at 1:08 PM Clifford Bohm ***@***.***> wrote:
Yea, I'm aware there is an issue there. Contracts, you are the first
person to use this who is not me. Someone needs to take a look and make a
fix.
On Mon, Jul 13, 2020 at 12:03 PM Vincent Ragusa ***@***.***>
wrote:
> In circular genome:
>
> mutationPointOffsetRange = 1.0 #(double) range of PointOffset mutation
>
> the default value of the parameter is 1.0 and is described as a double
> value, but the value 0.1 causes a segfault.
>
> —
> You are receiving this because you are subscribed to this thread.
> Reply to this email directly, view it on GitHub
> <#346>, or unsubscribe
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> .
>
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Cliff Bohm - Evolving Systems Technologist
BEACON Center for the Study of Evolution in Action
Michigan State University
--
Cliff Bohm - Evolving Systems Technologist
BEACON Center for the Study of Evolution in Action
Michigan State University
cliff-bohm commented
I take it back. I ran a new million mutations without segfault... I'm not seeing any issue here. Are you using an up to date version of the code? If so, I'm going to need a test case that fails (at least settings_organism.cfg that crashes).
I do remember there being an issue at one point. It's possible that the issue was fixed, and I forgot that I fixed it already...
VincentRagusa commented
This file recreates it on both master and development. Sorry if I'm missing something obvious.
settings_organism.txt
cliff-bohm commented
Okay, I think I see what's up. You have sitesType set to int. set it to
double and see if you get better results.
an offset of < 1 with sites type int is garbage. it would not crash, so
I'll need to look into that.
…On Tue, Jul 14, 2020 at 10:46 AM Vincent Ragusa ***@***.***> wrote:
This file recreates it on both master and development. Sorry if I'm
missing something obvious.
settings_organism.txt
<https://github.com/Hintzelab/MABE/files/4919441/settings_organism.txt>
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cliff-bohm commented
er "should not", not "would not"
…On Tue, Jul 14, 2020 at 10:49 AM Clifford Bohm ***@***.***> wrote:
Okay, I think I see what's up. You have sitesType set to int. set it to
double and see if you get better results.
an offset of < 1 with sites type int is garbage. it would not crash, so
I'll need to look into that.
On Tue, Jul 14, 2020 at 10:46 AM Vincent Ragusa ***@***.***>
wrote:
> This file recreates it on both master and development. Sorry if I'm
> missing something obvious.
> settings_organism.txt
> <https://github.com/Hintzelab/MABE/files/4919441/settings_organism.txt>
>
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Cliff Bohm - Evolving Systems Technologist
BEACON Center for the Study of Evolution in Action
Michigan State University
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Cliff Bohm - Evolving Systems Technologist
BEACON Center for the Study of Evolution in Action
Michigan State University
VincentRagusa commented
Right of course. That makes sense. Thanks for taking a look