Hobbeist
Data Scientist & Computational Biologist with an interest in interpretability and reproducibility
The Minderoo FoundationPerth, WA Australia
Pinned Repositories
DNAsmokeR
A R package to create a score for in utero exposure to maternal smoking, based on whole blood DNA methylation.
docker-varpp
kappaRule
OceanOmics-amplicon
A pipeline to analyse marine fish amplicon data
RWorkshop
Resources for the Telethon Kids 2 day introduction to R workshop
shinyGEM
Bioconductor package for genetic/epigenetic data analysis
TKIepiR
R package for post-EWAS analysis and visualisation
varppRule
OceanOmics-amplicon-nf
Pipeline to analyse amplicon data from raw reads to ecologically informative phyloseq objects
OceanOmics-amplicon-paper-analysis
This repository contains all data and code to reproduce the analysis of the "Exploring the data that explores the oceans" paper
Hobbeist's Repositories
Hobbeist/OceanOmics-amplicon
A pipeline to analyse marine fish amplicon data
Hobbeist/TKIepiR
R package for post-EWAS analysis and visualisation
Hobbeist/shinyGEM
Bioconductor package for genetic/epigenetic data analysis
Hobbeist/docker-varpp
Hobbeist/varppRule
Hobbeist/ggnord
Hobbeist/kappaRule
Hobbeist/ML-projects
Hobbeist/BandageNG
a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
Hobbeist/binder-test
Hobbeist/cookiecutter
A cross-platform command-line utility that creates projects from cookiecutters (project templates), e.g. Python package projects, C projects.
Hobbeist/dadasnake
Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake
Hobbeist/dot-files
dot-files selectively copied from Harry R. Schwartz (hrs/dotfiles), Howard Abrams (howardabrams/dot-files) etc..
Hobbeist/DT-Editor
This is a DT Editor Shiny app
Hobbeist/encode_pipeline_tki
Hobbeist/Hobbeist
Hobbeist/ica_extension
Hobbeist/nCoV_tracker
Covid 2019 interactive mapping tool
Hobbeist/nextflow-fastp-shiny
a shiny frontend for the nextflow-fastp pipeline
Hobbeist/OceanOmics-amplicon-nf
Hobbeist/OceanOmics-amplicon-paper-analysis
Hobbeist/pagoda2
R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets
Hobbeist/pb-human-wgs-workflow-snakemake
Workflow for the comprehensive detection and prioritization of variants in human genomes with PacBio HiFi reads
Hobbeist/ranacapa
R package for downstream analysis for anacapa eDNA pipeline
Hobbeist/reproducibility-template-python
Hobbeist/reproducibility-template-R
A template for reproducible R analysis projects
Hobbeist/shinyproxy-streamlit
Streamlit deployment in shinyproxy
Hobbeist/Supplement_Code_Smoking_Score
Hobbeist/Supplement_VARPP2
Hobbeist/varpp-project-datalad