This is the code adapted from the best performer for subchallenge 2.
It includes 1.data pre-process 2.model comparison (based on five-fold cross validation) 3.feature importance 4.plot
background: NCI-CPTAC DREAM
see also: Hongyang Li and Yuanfang Guan solution and Docker
Warning! You need to download the challenge DATA and put them into ./sub2/data/raw/ before running the codes
Usage:
bash bash_sub2.sh
pathway_sub2
analysis