Issues
- 0
Potential Update in the Future
#73 opened by KaiyueZou - 0
- 0
load_baseline_incidence
#63 opened by Hanmeng-Xu - 0
load_shapefile_by_country
#62 opened by Hanmeng-Xu - 0
surveillance_true_confirmation_rate
#61 opened by Hanmeng-Xu - 0
surveillance_pop_weighted_incid
#60 opened by Hanmeng-Xu - 0
load_worldpop_by_country
#59 opened by Hanmeng-Xu - 0
align_rasters
#58 opened by eclee25 - 1
Noted: The mean incidence rate raster is used for district-level vaccination decision-making process for now
#38 opened by KaiyueZou - 1
The external dataset that contains the confirmation rate has not been created and there is no code to accommodate its reading in yet
#43 opened by KaiyueZou - 1
Maybe create a separate check on "no-vaccination" scenario to boost efficiency
#44 opened by KaiyueZou - 1
Each year's newly updated incidence rates are averaged across layers, on which is the targeting decision based
#47 opened by KaiyueZou - 1
Now all the input raster are saved in memory, which may be burdensome and slow down the process
#48 opened by KaiyueZou - 1
Noted: the true cases are saved as external dataset, but the suspected cases will be transferred around for vacc decision-making purposes
#49 opened by KaiyueZou - 1
Noted: now across each year, the same district will be assigned with a different confirmation rate value
#50 opened by KaiyueZou - 1
- 1
- 1
Question about surveillance_create_expectedCases()
#55 opened by Hanmeng-Xu - 0
Noted: the NA district-level incidence rate will be replaced by 0 for simplicity purpose
#54 opened by KaiyueZou - 0
Doesn't support country-level skip years because both levels of districts are being simulated and they have different latest tagetted years
#53 opened by KaiyueZou - 1
The first year of incidence rate read in doesn't have incidence trend implemented yet
#41 opened by KaiyueZou - 0
Noted: lambda and pop raster sometimes don't agree with each other in those areas covered by rivers
#52 opened by KaiyueZou - 0
Noted: now we assume that the population raster during the same year remains constant -- from the beginning of the year when vacc is being carried out to the end of the year when the cases are summarized
#51 opened by KaiyueZou - 1
A better way to organize the raw output
#46 opened by KaiyueZou - 0
Noted: now we assume that the vacc happens at the beginning of each year and will affect that year's cases
#45 opened by KaiyueZou - 0
Noted: check package versions if exactextractr::exact_extract doesn't work as supposed
#42 opened by KaiyueZou - 0
- 0
Noted: every year's updated incidence will only be used to aid vacc decision-making, not to change the underlying spatial incidence rate raster
#39 opened by KaiyueZou - 0
- 1
Be able to set random seed
#22 opened by eclee25 - 0
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- 0
- 1
Diagnostic report enhancement
#31 opened by KaiyueZou - 1
Transfer raster files without corrupting them
#18 opened by KaiyueZou - 1
Bangladesh raster data is still on hold
#13 opened by KaiyueZou - 1
- 1
- 1
More retrieve functions to get the burden template (stochastic) and a stochastic parameters template
#28 opened by KaiyueZou - 0
Parallel computing issue
#30 opened by KaiyueZou - 0
- 0
Reconsider non-raster incidence data assignment
#23 opened by eclee25 - 1
make a diagnostic report template
#12 opened by eclee25 - 0
New touchstone compatibility check
#20 opened by KaiyueZou - 0
- 0
- 1
- 0
- 1
Log into Montagu API in Non-interactive ways
#16 opened by KaiyueZou - 1
Unwanted exports in NAMESPACE
#17 opened by KaiyueZou