Genotet

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An Interactive Web-based Visual Exploration Framework to Support Validation of Gene Regulatory Networks

Installation:

Install node.js and JRE on your machine.
Put the genotet folder to your server web directory, or your localhost web directory (e.g. xampp).
Install required packages for the web pages.
```
# at genotet/
npm install
```

Install required packages in the server folder.

# at genotet/
cd server
# now at genotet/server
npm install

Create and edit a server configuration file to set the data paths. The file shall be located at genotet/server/config.

networkPath = .../genotet_data/network/
bindingPath = .../genotet_data/binding/
expressionPath = .../genotet_data/expression/
bigWigToWigPath = .../genotet_data/bigWigToWig
uploadPath = .../genotet_data/upload/
bedPath = .../genotet_data/bed/
mappingPath = .../genotet_data/mapping/

Run the setup script.
```
bash setup.sh
```
Run the server.
```
node server/server.js
```

Howiezhang226/genotet

Genotet