bwa-mem2
Closed this issue · 1 comments
j23414 commented
Switch default from using bwa to bwa-mem2
Other notes:
- https://github.com/bwa-mem2/bwa-mem2
- check RAM usage if possible
j23414 commented
ahh... bwa-mem2 needs to added to the singularity image.
Probably by adding the following install line to https://github.com/aseetharam/gatk/blob/master/Singularity
curl -L https://github.com/bwa-mem2/bwa-mem2/releases/download/v2.1/bwa-mem2-2.1_x64-linux.tar.bz2 \
| tar jxf -