HumanCellAtlas/dcp2

Issues

• TDR `dev` dataset is stale

  #17 opened 3 years ago by hannes-ucsc
  20

• Azul requires fields that aren't required by the schema

  #23 opened 9 months ago by hannes-ucsc
  0

• Rename "contributor" to "community" in CGM

  #21 opened 4 years ago by hannes-ucsc
  0

• Many projects in `dev` and `prod` contain `||` in metadata

  #63 opened 2 years ago by achave11-ucsc
  20

• Can't tell from TDR's responses whether snapshot is public

  #56 opened 3 years ago by hannes-ucsc
  0

• Ontology label cleanup

  #58 opened 3 years ago by NoopDog
  1

• Metadata contains incorrect values for library_preparation_protocol.library_construction_method

  #13 opened 4 years ago by NoopDog
  11

• Copy LungMAP snapshots to TDR `dev`

  #62 opened 3 years ago by hannes-ucsc
  1

• Update spec for new staging areas for linking updates and deletes

  #59 opened 3 years ago by aaclan-ebi
  0

• TDR's enumerateSnapshot response isn't sorted by default

  #61 opened 3 years ago by hannes-ucsc
  0

• Metadata contains incorrect values for species

  #26 opened 3 years ago by NoopDog
  1

• TDR's enumerateSnapshots takes more than 30s

  #57 opened 3 years ago by achave11-ucsc
  0

• TDR's enumerateSnapshots response lacks name of Google project

  #54 opened 3 years ago by hannes-ucsc
  8

• `ega_accession` values are inconsistent in project c715cd2f-dc7c-44a6-9cd5-b6a6d9f075ae

  #49 opened 3 years ago by amarjandu
  6

• Analysis subgraphs might be too big for Azul

  #50 opened 3 years ago by hannes-ucsc
  2

• Submitter ID for Lungmap is based on wrong slug

  #35 opened 3 years ago by dsotirho-ucsc
  0

• Data Browser shows meaningless strings in Analysis Protocol facet drop-down

  #51 opened 3 years ago by hannes-ucsc
  5

• Allow for TDR dataset per HCA project

  #37 opened 3 years ago by hannes-ucsc
  0

• Specify optional setting of `submission_date` by importer

  #40 opened 3 years ago by hannes-ucsc
  0

• Undefined inputs in project f48e7c39-cc67-4055-9d79-bc437892840c

  #45 opened 3 years ago by hannes-ucsc
  5

• Undefined inputs in project 83f5188e-3bf7-4956-9544-cea4f8997756

  #48 opened 3 years ago by hannes-ucsc
  5

• Lungmap `dev` snapshot is in wrong location

  #47 opened 3 years ago by hannes-ucsc
  2

• TDR's `GET /repository/v1/snapshots` takes too long

  #46 opened 3 years ago by hannes-ucsc
  3

• TDR does not support dashes in dataset or snapshot names

  #28 opened 3 years ago by hannes-ucsc
  1

• Analysis does not populate `file_core.file_source`

  #39 opened 3 years ago by hannes-ucsc
  0

• DCP/2 analysis doesn't populate `file_core.content_description`

  #30 opened 4 years ago by theathorn
  2

• Specify the production/consumption of ontologized properties

  #36 opened 3 years ago by hannes-ucsc
  0

• Donor with age but no unit in project 403c3e76-6814-4a2d-a580-5dd5de38c7ff

  #31 opened 3 years ago by hannes-ucsc
  2

• Have analysis provide input subgraphs explicitly

  #33 opened 3 years ago by hannes-ucsc
  0

• Stiching trips over mixed `links` schema versions

  #32 opened 3 years ago by hannes-ucsc
  3

• Number section headings in documents

  #25 opened 4 years ago by hannes-ucsc
  0

• Spring 2021 Matrix Usability Study actionable feedback

  #27 opened 4 years ago by NoopDog
  0

• Create metadata schema for staging_area.json

  #24 opened 4 years ago by hannes-ucsc
  0

• Adding/modifying ontology terms takes a long time

  #10 opened 4 years ago by hannes-ucsc
  0

• Analysis does not populate `analysis_file.matrix_cell_count`

  #11 opened 4 years ago by hannes-ucsc
  0

• Analysis does not populate `analysis_protocol.matrix`

  #12 opened 4 years ago by hannes-ucsc
  0

• Document that process IDs are reused for subgraphs

  #20 opened 4 years ago by hannes-ucsc
  0

• Add disclaimer about matrix batch effects and normalization of CGMs

  #18 opened 4 years ago by hannes-ucsc
  0

• Labeller test

  #16 opened 4 years ago by hannes-ucsc
  0

• Link to example document is broken

  #3 opened 4 years ago by jessebrennan
  0

• Add orange labeler

  #4 opened 4 years ago by hannes-ucsc
  1

• Sync labels

  #5 opened 4 years ago by hannes-ucsc
  2

• Add branch protection

  #1 opened 4 years ago by jessebrennan
  1