/mpboot

MPBoot: Fast phylogenetic maximum parsimony tree inference and bootstrap approximation

Primary LanguageC++GNU General Public License v2.0GPL-2.0

mpboot

MPBoot: Fast phylogenetic maximum parsimony tree inference and bootstrap approximation

COMPILING INSTRUCTION SINCE 2020

  • Clone the source code, unzip it, and rename to source
  • Create folder build outside folder source
  • Change directory to build
  • Run cmake command:

cmake ../source -DIQTREE_FLAGS=sse4 -DCMAKE_C_COMPILER=clang -DCMAKE_CXX_COMPILER=clang++

  • Replace sse4 by avx in above command if you decide to run MPBoot on AVX architecture
  • Run make
  • You will find the executable named mpboot once the make command is done.



COMPILING INSTRUCTION PRIOR TO 2020

  • Clone the source code, unzip it, and rename to source
  • Change directory to source, run following commands to update the sub-repository

       git submodule init

       git submodule update

       cd pllrepo

       git checkout subufbootmp

  • Create folder build outside folder source
  • Change directory to build
  • Run cmake command:

cmake ../source -DIQTREE_FLAGS=sse4 -DCMAKE_C_COMPILER=clang -DCMAKE_CXX_COMPILER=clang++

  • Replace sse4 by avx in above command if you decide to run MPBoot on AVX architecture
  • Run make
  • You will find the executable named mpboot once the make command is done.