PACSTool

Helper tool for querying a PACS server:

Takes patient names as input (either as command line parameters or from an input file)
resolves ids and other patient specificas by querying a PACS sever
returns these values either on standard output or written into an output file

Usages


java -jar PACS-Tool.jar -h

Usage: PACSTool [options]
  Options:
    -h, --help
       This usage summary

    -c, --command
       RESOLVE_PATIENT_IDS, RESOLVE_STUDY_INSTANCE_UIDS or RESOLVE_SERIES_INSTANCE_UIDS

    -output-file, -o
       Output file name
       
    -patient-name, -pn
       Patient name
       
    -input-file, -i
       e.g. Patient names file
       
    -port, -p
       PACS server port number
       Default: 9090
       
    -server, -s
       PACS server IP address
       Default: localhost

    -bind, -b
      <aet[@ip][:port]>

Examples

java -jar PACS-Tool.jar -patient-name Verdi -patient-name Neri -s localhost -u OSIRIX -p 11112 -c RESOLVE_PATIENT_IDS

java -jar PACS-Tool.jar -input-file test-classes/osirixNames.csv -s localhost -u OSIRIX -p 11112 -c RESOLVE_PATIENT_IDS

java -jar PACS-Tool.jar -input-file test-classes/osirixNames.csv -s localhost -u OSIRIX -p 11112 -c RESOLVE_PATIENT_IDS -o /tmp/out.csv

java -jar PACS-Tool.jar -input-file test-classes/osirixNamesAndIds.csv -s localhost -u OSIRIX -p 11112 -c RESOLVE_STUDY_INSTANCE_UIDS -o /tmp/out.csv

java -jar PACS-Tool.jar -input-file test-classes/osirixNamesIdsAndStudyInstanceUIDs.csv -s localhost -u OSIRIX -p 11112 -c RESOLVE_SERIES_INSTANCE_UIDS -o /tmp/out.csv

Input File Example

Patient Name;Patient ID;Study Instance UID;Study Date;Study Description;Series Instance UID;Series Description;Result
Verdi Anna Fasula;;;;;;;
Neri Mario Fasulo;;;;;;;

Output File Example

Patient Name;Patient ID;Study Instance UID;Study Date;Study Description;Series Instance UID;Series Description;Result
Neri Mario Fasulo;STLZ00102;1.2.840.113619.6.95.31.0.3.4.1.4285.13.24109562;20140901;Ct Thorax;1.3.12.2.1107.5.1.4.65362.30000014090113251401600000625,1.3.12.2.1107.5.1.4.65362.30000014090113251401600000701;Localizers;
Neri Mario Fasulo;STLZ00102;1.2.840.113619.6.95.31.0.3.4.1.4285.13.24109562;20140901;Ct Thorax;1.3.12.2.1107.5.1.4.65362.30000014090113255231000012241;Thorax Nativ 5.0 sagittal Weichteil;
Neri Mario Fasulo;STLZ00102;1.2.840.113619.6.95.31.0.3.4.1.4285.13.24109562;20140901;Ct Thorax;1.3.12.2.1107.5.1.4.65362.30000014090113255231000011779;Thorax Nativ 1.0 axial I50f LCAD;
Neri Mario Fasulo;STLZ00102;1.2.840.113619.6.95.31.0.3.4.1.4285.13.24109562;20140901;CT Thorax;1.3.12.2.1107.5.1.4.65362.30000014090113255231000011270;Thorax Nativ 1.0 I26f 3;
Neri Mario Fasulo;STLZ00102;1.2.840.113619.6.95.31.0.3.4.1.4285.13.24109562;20140901;Ct Thorax;1.3.12.2.1107.5.1.4.65362.30000014090113255231000011633;Thorax Nativ 5.0 I26f 3;
Verdi Anna Fasula;STLZ00081;1.2.840.113619.6.95.31.0.3.4.1.4285.13.24022366;20140415;Ct Thorax;1.3.12.2.1107.5.1.4.65362.30000014041503061104900037202;Thorax 1.0 I50f 3 LCAD;
Verdi Anna Fasula;STLZ00081;1.2.840.113619.6.95.31.0.3.4.1.4285.13.24022366;20140415;Ct Thorax;1.3.12.2.1107.5.1.4.65362.30000014041503061104900036910;Thorax 1.0 I26f 3;
Verdi Anna Fasula;STLZ00081;1.2.840.113619.6.95.31.0.3.4.1.4285.13.24206395;20150316;Ct Thorax;1.3.12.2.1107.5.1.4.73395.30000015031606155975500010450;Thorax 1.0 I26f 3;
Neri Mario Fasulo;STLZ00102;1.2.840.113619.2.55.3.1544161810.500.1394691251.680;20140314;PET CT Onko Infekt;1.2.840.113619.2.131.1544161810.1394784249.811101;WB_3D;
Verdi Anna Fasula;STLZ00081;1.2.840.113619.6.95.31.0.3.4.1.4285.13.24206395;20150316;Ct Thorax;1.3.12.2.1107.5.1.4.73395.30000015031600000435500000958;Localizers;
Neri Mario Fasulo;STLZ00102;1.2.840.113619.6.95.31.0.3.4.1.4285.13.24109562;20140901;Ct Thorax;1.2.276.0.7238010.5.1.3.0.13456.1458130641.73;OsiriX Report SR;

Installation

Install OsirixLite
Import test data set for Neri Mario Fasulo and Verdi Anna Fasula into Osirix
Set username OSIRIX
mvn package

Tests

Class com.fourquant.riqae.pacs.LocalOsirixTest simulates workflow (patient names to images) and usage of dcm2xml and dcm2jpg