IEDB/PEPMatch

Issues

• Add terminal progress

  #13 opened 9 months ago by dmx2
  1

• Pandas data type exception: trying to get an integer from ''

  #14 opened 3 months ago by patrick-willems
  1

• Batch kmer generation

  #17 opened 6 months ago by InfiniGeorges
  2

• include `swissprot` column in metadata for protein review status

  #16 opened 7 months ago by dmx2
  1

• make numeric columns into `str` values to avoid float conversion

  #15 opened 7 months ago by dmx2
  0

• pandas --> polars switch

  #12 opened 9 months ago by dmx2
  0

• `-o` flag should also allow for path to location for file writing

  #7 opened 10 months ago by dmx2
  0

• TypeError: object cannot be converted to an IntegerDtype for converting `int_cols`

  #9 opened 10 months ago by dmx2
  1

• allow for addition of SQLite table if `.db` file already exists

  #10 opened 10 months ago by dmx2
  0

• Fail to import hamming

  #6 opened 10 months ago by Hayfabm
  5

• allow for FASTA queries to retain the headers for the final output

  #8 opened 10 months ago by dmx2
  0

• rows of peptides that did not match get dropped after best_match=True

  #3 opened a year ago by dmx2
  1

• fix metadata retrieval when not using UniProt proteomes

  #5 opened 2 years ago by dmx2
  0

• Species Questions About reference proteome

  #4 opened 2 years ago by peomelo
  1

• results are different when proteome already preprocessed

  #2 opened 2 years ago by dmx2
  0

• Additional documents/publications to better understand the PEPMatch tools

  #1 opened 2 years ago by ravinpoudel
  1