IEDB/arborist

Issues

• Add genes nodes to protein tree

  #19 opened 3 months ago by jamesaoverton
  1

• Break down polyprotein "fragments" into names of proteins

  #46 opened 3 months ago by dmx2
  0

• Fix overlapping fragments

  #45 opened 3 months ago by dmx2
  1

• make end-to-end testing

  #48 opened 3 months ago by dmx2
  0

• Redo how we align epitopes with no exact match

  #47 opened 3 months ago by dmx2
  0

• protein tree testing: inconsistent polyprotein annotations

  #40 opened 3 months ago by jgbaum
  1

• protein tree testing: issue with expand/collapse of 'homo sapiens' node

  #42 opened 4 months ago by jgbaum
  3

• protein tree testing: mixed plurality used in labels at the high level

  #37 opened 5 months ago by jgbaum
  0

• protein tree testing: Archaea potentially mislabeled

  #38 opened 5 months ago by jgbaum
  1

• protein tree testing: 'other virus' category

  #39 opened 5 months ago by jgbaum
  1

• protein tree testing: potentially unnecessary 'other' category under 'vertebrate'

  #41 opened 5 months ago by jgbaum
  0

• ImmunomeBrowser x-axis

  #44 opened 4 months ago by jasonzhyan
  3

• Protein tree selection

  #43 opened 4 months ago by Marcus-Mendes
  3

• Add MHC nodes to protein tree

  #33 opened 7 months ago by dmx2
  0

• Fragments aren't properly splitting on the test build site

  #34 opened 7 months ago by dmx2
  0

• nan entries in test build

  #35 opened 7 months ago by dmx2
  1

• Add allergen table to Nanobot configs

  #36 opened 8 months ago by jamesaoverton
  0

• Add MRO nodes to protein tree

  #21 opened 9 months ago by jamesaoverton
  0

• SRCs not being assigned properly

  #30 opened 8 months ago by dmx2
  0

• Add protein fragments to protein tree

  #12 opened 9 months ago by jamesaoverton
  1

• Add annotations to protein_tree tables for the molecule finder

  #27 opened 9 months ago by dmx2
  0

• Add immunoglobulin nodes to protein tree

  #16 opened 9 months ago by jamesaoverton
  0

• peptide.sql should include region on multi-chain proteins and spliced peptides

  #29 opened 9 months ago by dmx2
  0

• group source antigens that do not match into "other" nodes per species

  #13 opened 9 months ago by dmx2
  1

• Generate Leidos-specific files

  #11 opened 9 months ago by jamesaoverton
  5

• Skip old sources and peptides each build unless the proteome has changed

  #28 opened 9 months ago by dmx2
  0

• Missing species in the old protein tree test build

  #26 opened 9 months ago by dmx2
  3

• Ensure non-peptides appear in Molecule Finder

  #18 opened 9 months ago by jamesaoverton
  1

• Fix problem with strains in current protein tree

  #22 opened 9 months ago by jamesaoverton
  2

• Add gene names to OwlImporterV2 search tables

  #20 opened 9 months ago by jamesaoverton
  0

• Fix Nanobot to display large numbers of siblings in the tree

  #17 opened 9 months ago by jamesaoverton
  0

• Develop workflow for reviewing and updating NCBI Taxonomy

  #14 opened 10 months ago by jamesaoverton
  0

• generate epitope_mappings.tsv and epitope_mappings_new.tsv for Leidos

  #10 opened 10 months ago by dmx2
  0