rigvf provides access the Impact of Genomic Variation on Function (IGVF) Catalog from within R/Bioconductor, allowing integration with Bioconductor resources, classes, and methods.
Only limited functionality is currently implemented, mostly centered around associations among genetic variants, genomic elements, and genes.
Install the development version from GitHub with:
## install.packages("BiocManager") # if not installed
BiocManager::install("IGVF/rigvf")
See the Accessing data from the IGVF Catalog vignette for basic use.
See ?catalog_queries
and ?db_queries
for example functions for accessing
IGVF data through the Catalog API and ArangoDB API, respectively.
For IGVF Catalog data license, see the IGVF policy page.