Hass-genotyping
This is a repository for a analysis of GBS data in R.
The R packages used in this repository are shown below:
- vcfR: https://cran.r-project.org/web/packages/vcfR/index.html
- poppr: https://cran.r-project.org/web/packages/poppr/index.html
- adegenet: https://cran.r-project.org/web/packages/adegenet/adegenet.pdf
- ggplot: https://cran.r-project.org/web/packages/ggplot2/index.html
- ape: https://cran.r-project.org/web/packages/ape/index.html
- reshape2: https://cran.r-project.org/web/packages/reshape2/index.html
-Note that this file is subject to frequent changes.
Publications
Talavera, A., Soorni, A., Bombarely, A., Matas A. J. & Hormaza J. I. (2019) Genome-Wide SNP discovery and genomic characterization in avocado (Persea americana Mill.). Sci Rep 9, 20137. https://doi.org/10.1038/s41598-019-56526-4
Acknowledgements
Thank you to the developers of the packages used in this repository.